Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1251 TTACACTCTAGAAAAATGGCATCATCAAGCTCTTACAACTCTCCATGTGCTGCTTGCAAATTCTTGAGGAGGAAGTGTTTGCCAGGATGCATCTTTGCACCTTACTTCCCACCTGAAGAACCCCAAAAATTCGCSAATGTTCACAAGATCTTCGGCGCGAGCAATGTCACCAAGCTTCTCAARGAGCTTCTGCCTCAGCAGAGGGAAGACGCAGTGAATTCCCTCGCYTACGAGGCAGAAGCTCGTGTGAGAGACCCTGTTTACGGCTGCGTTGGCGCCATKTCTTACCTTCAGAGACAAGTCCAGAGACTTCAGAAGGAACTTGATGCTGCCAACGCGGATCTTCTTCGCTACGCTTGCAACGAAATRCCTCCTCCACARCATCATGTCCCAACCRTYGCACCACCATTAACTCCCACAATTCATCATCAACTRACACAAAGGCACTTTGGTGGTGCAAGAATTGGCAATGATCATGGAATTGGATTTTATAGGCAATCTCCAACCACRTATTCCTTCCCTTATTCTCTTCCATGGAATGAGGACATCAATGGTGGAGGAGCAGAAGGAGGAGGTAATTTATGA 585 0.465 LHSRKMASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLKELLPQQREDAVNSLAYEAEARVRDPVYGCVGAXSYLQRQVQRLQKELDAANADLLRYACNEXPPPQHHVPTXAPPLTPTIHHQLTQRHFGGARIGNDHGIGFYRQSPTTYSFPYSLPWNEDINGGGAEGGGNL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1251 194 PANTHER ELONGATED PETIOLULE 1 6 190 - -
Amo03g1251 194 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Amo03g1251 194 Coils Coil 95 121 - -
Amo03g1251 194 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Amo03g1251 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1251 Amo-Chr3 28762915 28765360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1251 6 194 AS2 family AT5G63090 61.881 8.44e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo03g1251 LOB 2.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1251 - - gmx:100799774 275.789