Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1249 ATGAATAAAGCGATCGATTTTGCTTCAATTTTCTTACTCTTCACACTCTTTCCTCATCAATTTATTGTTCGTGTTTCTTCATCCAGTTCACCCATACATCCGAACCAGGGATATGCAGATGAAAGAATTCTCAAACCGGAACAAGAGCATGTCCATGAAGTGCATTGCTCTAGAGAAAGGAGCAGGGCAGCTAGGAAAGTAATAGAGGAGTATTTGACACCATTTTTGGAGCAAGAAAACTATCAGCTTTCAAGCAAGTGCAGACTTCACCCTGAAAATGACATGTTTAGGGATCAAGAAGAGCATAAAATTTGCCTAGGCTTTCATGACTGGAAGTGCGGATATTGTAAGAAAAGCTTCCGAGATGAGAAGTTTCTTGATCAGCATTTTGATAACAGACACTCCAATCTTCTCAATTTAAGTGATGGGAAGTGCTTGGCTGATTTATGTGGGGCATTGCATTGCGATGCTGTGATGAACAGGAAGTTCTCTAGAAGCAAGTGTAATCCAGCTGCTGCCACGAGGAATAAACACCTATGTGAGAGTCTTGCTGAGAGTTGTTTTCCTGTAAGTGATGGTCCATCTGCAAGTCGTCTTCATGAAATATTTTTACACCAATTTTGTGAGGCCCATACCTGCTCAGGGAAACAGAAACCCTTCTCTAGAGGAGGCAAGGTACAAAAAAGTATCTTCGTTGTGGTTTCTGGAGCATTGATCTTGGTGCTACTTCCTTTGTTCTATCTTTTCCTTTATCTGGTACAAAGAGATATGAAGAGTAGTACTCAAGAACTTCGCCGCATCTCAAAAATGGGACGGAAATCAAAGCCATCATGA 834 0.4113 MNKAIDFASIFLLFTLFPHQFIVRVSSSSSPIHPNQGYADERILKPEQEHVHEVHCSRERSRAARKVIEEYLTPFLEQENYQLSSKCRLHPENDMFRDQEEHKICLGFHDWKCGYCKKSFRDEKFLDQHFDNRHSNLLNLSDGKCLADLCGALHCDAVMNRKFSRSKCNPAAATRNKHLCESLAESCFPVSDGPSASRLHEIFLHQFCEAHTCSGKQKPFSRGGKVQKSIFVVVSGALILVLLPLFYLFLYLVQRDMKSSTQELRRISKMGRKSKPS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1249 277 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 25 277 - -
Amo03g1249 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 136 IPR013087 -
Amo03g1249 277 PANTHER ZINC FINGER PROTEIN-RELATED 25 277 - -
Amo03g1249 277 ProSitePatterns Zinc finger C2H2 type domain signature. 113 134 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1249 Amo-Chr3 28735878 28738891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1249 35 277 C2H2 Transcription Factor Family AT5G63280 60.081 1.18e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo03g1249 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1249 - - lang:109362398 385.571