Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1247 ATGGGGGCGGCGGAGACGGAGTTGTTAACGGCGGCGGAGCAGCCACGAAAGGCACCGCGGCCAGGTAAAGGAGGATACTCAGGTCACGGCCTGAGCGAAGAAGAAGCGCGCGTGCGCGCAATCTCTGAGATCGTGAGTTCCATGGTTGAGCTCTCGCGTAAGGGACAGAACGTCGACCTCAACGCGCTCAAGTCTAGCGCGTGTCGCAAGTATGGCCTCGCACGCGCTCCGAAGCTCGTGGAGATGATTGCTGCACTCCCTGACTCCGAGCGCGATGCGCTCCTCCCTAAGCTTAGGGCGAAACCGGTTCGAACCGCCTCTGGAATCGCGGTGGTGGCGGTTATGTCGAAGCCGCATCGGTGCCCGCACATCGCGACCACCGGAAACATATGCGTTTACTGTCCCGGAGGACCTGACTCGGATTTTGAGTACAGTACTCAGTCTTACACTGGTTATGAACCGACTAGTATGCGTGCAATTCGAGCGAGGTATAACCCATATGTCCAAGCAAGAAGCAGGATAGATCAGCTTAAGCGTTTGGGTCACAGTGTAGACAAGGTTGAGTTCATTTTAATGGGTGGTACTTTCATGTCGCTTCCTGCTGATTACCGTGATTACTTCATAAGGAATCTTCATGATGCTTTGTCTGGACATACTTCTGCCAATGTAGAAGAAGCGGTTGCATACTCTGAGCACAGTGCAACTAAGTGTATCGGCATGACAATTGAGACAAGGCCAGATTATTGTCTTGGGCCTCACTTGCGGCAAATGCTTTCCTATGGTTGTACACGGTTGGAAATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGAGACACTAACAGAGGGCATACAGTAGCTGCTGTGGCTGATTGTTTTTCCTTGGCAAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCTAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGAGCCCCTCATTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATACGTGGAACTGGACTTTATGAGCTCTGGAAAACTGGGAGGTATAGAAATTATCCACCTGAGCAACTTGTGGATATCATAGCTAGGATTCTTGCTATGGTGCCACCTTGGACACGTGTTTATAGAGTTCAACGGGATATTCCCATGCCTCTGGTTACATCTGGGGTTGAGAAAGGAAATCTGAGAGAGCTAGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGACGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCACCACCAAATTAGGCCAGAGGAGGTGGAGCTTGTACGTCGTGATTATACTGCAAATGAGGGCTGGGAGACATTTCTCTCATATGAAGATACACGTCAGGATATCCTTGTTGGTCTTCTACGACTGCGAAAATGTGGCCGAAACGTTACTTGCCCAGAGCTAATGGGCAAGTGTTCTATTGTTCGTGAACTTCATGTTTATGGAACTGCTGTACCAGTTCATGGGAGGGATGCTGACAAGCTACAACACCAGGGTTATGGTACGCTTCTAATGGAGGAGGCAGAGCGTATTGCTTTAAGAGAACACCGATCAACAAAAATAGCTGTAATTTCAGGGGTTGGCACCCGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGGCCTTACATGGTTAAATATCTAGTATAA 1710 0.4877 MGAAETELLTAAEQPRKAPRPGKGGYSGHGLSEEEARVRAISEIVSSMVELSRKGQNVDLNALKSSACRKYGLARAPKLVEMIAALPDSERDALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFSLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIRPEEVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIALREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLV* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1247 569 SUPERFAMILY Radical SAM enzymes 141 380 - -
Amo03g1247 569 SMART MiaB 111 373 IPR006638 GO:0003824|GO:0051536
Amo03g1247 569 Pfam Acetyltransferase (GNAT) family 421 557 IPR000182 GO:0016407
Amo03g1247 569 CDD Radical_SAM 118 365 - -
Amo03g1247 569 ProSiteProfiles Radical SAM core domain profile. 104 394 IPR007197 GO:0003824|GO:0051536
Amo03g1247 569 SFLD Radical SAM 59 568 IPR007197 GO:0003824|GO:0051536
Amo03g1247 569 PANTHER ELONGATOR COMPLEX PROTEIN 3 13 568 IPR034687 -
Amo03g1247 569 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 56 568 IPR034687 -
Amo03g1247 569 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 418 569 IPR000182 GO:0016407
Amo03g1247 569 MobiDBLite consensus disorder prediction 1 31 - -
Amo03g1247 569 Pfam Radical_SAM C-terminal domain 335 414 IPR032432 -
Amo03g1247 569 Gene3D - 420 569 - -
Amo03g1247 569 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 13 568 IPR039661 -
Amo03g1247 569 PIRSF HAT_Elp3 26 569 IPR034687 -
Amo03g1247 569 Pfam Radical SAM superfamily 129 317 IPR007197 GO:0003824|GO:0051536
Amo03g1247 569 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 309 564 IPR016181 -
Amo03g1247 569 SFLD ELP3-like 59 568 IPR034687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1247 Amo-Chr3 28729422 28733364 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Amo03g1247 Radical_SAM 3.6e-18 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1247 K07739 - gmx:100818764 1085.86