Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1245 ATGGGTGAAAATTACGACTATATTTCTGATATCAATGCAAGAAAATTTTGTTGGAACTTTAAAGTATATGTAATCAGAATTTGGGAACATCCGAGTAAGTTCAACGAGAAGGAGATTGGAAGCATAGAGATGATCCTGCAAGATAGTAAGGGTGGAAGGGGCCATGCTTCAATACCCAAGTCTATAGTTAAGAAATGGAGTGGTGTATTTCAGGTGTTTCAGATGTATATTATAAAGAACTTTATAGTGGTGGACAACAAAACCATAAAAAAACCCACTCCATATCGCTGGATACTGACTTTTTCACACAGGACGGAGGTCAATCACTTTATGAATCCTACTTTTCCTCTTGACGCATTTGTGTTCAAGACTATACCGGAATTGCTCACGGCCGAGAAGATCGAAAACTCAGAGCTATTTGACATGATTGGTGAGGTAGTTGGAAAGCATGATCCCAGAGAGTTAGTCACCAGCAAAGGGAAGGAGACCAAACGGTTGGTTGTGGTGTTGCAAGATCTGGAAAAAAATAGGATTAACTGCACTTTATTTGGTGAAATGGTCGATGAGATACTACCACATCTGGAAGTTGGAAGGCTGGAGCCACTTATTGTAGTTATACAATACTTTAAGGCAATTAGGTGGAATGGACAAACTTCGGTCCAGAGTCATTTTGAGATCTCCAAACTCCACATCAATGCAGAGTTGAAGGATGTTGTTGGATTTAGGGACAGGTTGCTAAAGGGGGCACCATCCAATGCTTCAAGAATAAGTCAAATGTCATTCCAAAGTGGCTGGTCTGGCATGGAAGAGATTACTAATGGGTCTGCATTAGTTAAAACCATTGAAGAGGTCCTGAGTTCCAAAGAGGAGGGTCCTATTTGGGTTGCTGGAACTATTGTGGCCATAAATTGCAGCAAGAATGATTGGTATTACAAGGCCTGCAGAAGATGTCCTAAGAAAGTTGAAACACCAGTTGGTAATAGATACGAATGTGACAAATGCGGCCACACGCATGGAACTGCATCTATAAGATACAAGGTGGAGGTCATGGTCTTTGATGGAACAGGCAGCATTTCTCTCTTGCTATGGGATAGAGAAACAAGCCAATTATGTGGGAAACAAGCTGAAAAAGTTTTGGAGGAAGATGGTGGACGTGAGGATGAATACCCCCTTACCCTAGACAACATGATGGATAGGAGACTTTTATTTAAGATAAATGTGAAAGCTGCTAATATCAGTGGCTATGATCAAGTGTTCACTGTGATGAAGATATGTGACGATGAAGAAGTTGTTGACAAAAACCTACCCAAGAATTTTGATGGAAATTCATCAATGAATATGACGGAAAATGGGTGCAGTAACTCACTTGATATGTTTGGGAACATTACTGATCTTAATACTGACACTGACCCTGATGCTCAGTATACTATGGATATTAGAGAAGATTCCATAACCAGTCTCAAGTGTAAAACCCCTGCTAAAAGAGTTACAAATGGCTTTAGATCTGGCTCTAGCAGTGCAATCCAAAATGAAGATGAGGGACAACTCTCAACAAACAAGTTTAGCCGAAAGAATGCCAAGAAGCAAAAATCTATAATGATAGATGGAGAAAATTGA 1617 0.4007 MGENYDYISDINARKFCWNFKVYVIRIWEHPSKFNEKEIGSIEMILQDSKGGRGHASIPKSIVKKWSGVFQVFQMYIIKNFIVVDNKTIKKPTPYRWILTFSHRTEVNHFMNPTFPLDAFVFKTIPELLTAEKIENSELFDMIGEVVGKHDPRELVTSKGKETKRLVVVLQDLEKNRINCTLFGEMVDEILPHLEVGRLEPLIVVIQYFKAIRWNGQTSVQSHFEISKLHINAELKDVVGFRDRLLKGAPSNASRISQMSFQSGWSGMEEITNGSALVKTIEEVLSSKEEGPIWVAGTIVAINCSKNDWYYKACRRCPKKVETPVGNRYECDKCGHTHGTASIRYKVEVMVFDGTGSISLLLWDRETSQLCGKQAEKVLEEDGGREDEYPLTLDNMMDRRLLFKINVKAANISGYDQVFTVMKICDDEEVVDKNLPKNFDGNSSMNMTENGCSNSLDMFGNITDLNTDTDPDAQYTMDIREDSITSLKCKTPAKRVTNGFRSGSSSAIQNEDEGQLSTNKFSRKNAKKQKSIMIDGEN* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1245 538 Gene3D - 7 111 IPR012340 -
Amo03g1245 538 MobiDBLite consensus disorder prediction 498 522 - -
Amo03g1245 538 CDD RPA1_DBD_B_like 141 245 - -
Amo03g1245 538 CDD RPA1_DBD_A_like 21 107 - -
Amo03g1245 538 Gene3D - 262 433 IPR012340 -
Amo03g1245 538 SUPERFAMILY Nucleic acid-binding proteins 279 426 IPR012340 -
Amo03g1245 538 Gene3D - 114 252 IPR012340 -
Amo03g1245 538 PANTHER REPLICATION FACTOR A 1, RFA1 129 509 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo03g1245 538 CDD RPA1_DBD_C 278 424 IPR013955 -
Amo03g1245 538 PANTHER BNAC07G49340D PROTEIN 129 509 - -
Amo03g1245 538 Pfam Replication factor-A C terminal domain 296 424 IPR013955 -
Amo03g1245 538 MobiDBLite consensus disorder prediction 498 538 - -
Amo03g1245 538 SUPERFAMILY Nucleic acid-binding proteins 4 110 IPR012340 -
Amo03g1245 538 SUPERFAMILY Nucleic acid-binding proteins 125 245 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1245 Amo-Chr3 28717724 28720538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1245 8 378 Core DNA Replication Machinery Family AT2G06510 22.821 8.53e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1245 - - adu:107477039 661.373