Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1226 CGCAAAAAAGAGGCCGAGATCAAAGGTACTGAGAGTGCAGAGAAGCTAAAAACAGAGATACCTGAGGAAGATAAAACTGACAATAACACAATATTGGGAACAGCAACAGAATCAATATTGTTGGAATTTGGTTTGCTCGAAGATGGTGATTTGATGCACATCCCTTCCAATTCAGTTCGAAATAAGATGTCAGTGCTTGTTAGTCTTCCTAATAGAGGAGTCAGAGCTTTCTGCAAAGGAGCATCAGAAATAATATTAAGAATATGTGACAAAATCATTGATTCTAATGGAAATGATGTTGATCTTCCTGAAGAACAGGCGAATAAAGTTAATGCTCTGAGAACTCTTTCTGTGGTTGTTAAAGATATAGATGCAACAGAAGGAGAAAATAGTATCCTTGATAATGGCTATACTCTGATAATAGTTGGTTTAAAAAGAGAGTTTGTATTAACATCTGTAATTCATGCAGATTCAAAGGCAGAAGTAATAGCTCCGTCACCAAAGTCGTTAATGGCAATGAACCGTTTCGTGTGTGAGATATGCAAGAAAGGGTTCCAGAGGGACCAGAACCTACAGTTGCACTGGCAAAGGCACAACCTGCCGTGGAAGCTTCGGCAGCGAGAGAAGGAGGTGGTGGTGCGGAAGAAGGTGGACGAGGGTTGA 663 0.4057 RKKEAEIKGTESAEKLKTEIPEEDKTDNNTILGTATESILLEFGLLEDGDLMHIPSNSVRNKMSVLVSLPNRGVRAFCKGASEIILRICDKIIDSNGNDVDLPEEQANKVNALRTLSVVVKDIDATEGENSILDNGYTLIIVGLKREFVLTSVIHADSKAEVIAPSPKSLMAMNRFVCEICKKGFQRDQNLQLHWQRHNLPWKLRQREKEVVVRKKVDEG* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1226 220 PANTHER CALCIUM-TRANSPORTING ATPASE 18 145 - -
Amo03g1226 220 Gene3D Classic Zinc Finger 156 220 - -
Amo03g1226 220 Gene3D - 3 145 IPR023299 GO:0000166
Amo03g1226 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 198 IPR013087 -
Amo03g1226 220 SUPERFAMILY beta-beta-alpha zinc fingers 175 199 IPR036236 -
Amo03g1226 220 MobiDBLite consensus disorder prediction 1 26 - -
Amo03g1226 220 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Amo03g1226 220 PANTHER CATION TRANSPORTING ATPASE 18 145 - -
Amo03g1226 220 Pfam Cation transport ATPase (P-type) 24 92 - -
Amo03g1226 220 MobiDBLite consensus disorder prediction 1 29 - -
Amo03g1226 220 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 25 134 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1226 Amo-Chr3 28504130 28505207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1226 23 145 Primary Pumps ATPases AT2G41560 46.528 5.32e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo03g1226 Cation_ATPase 2e-07 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1226 K01537 - gmx:100785768 149.443