Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1219 ATGGCGGAAATTGAAAAGCTGAGGATAAGAAATCACGAGTTAGAATCACGTTTGCCTGAAAGCAGCAAAGAATCAAGCGCTRCCGATCAAGAAATTAGCAAAACTATGTTATTGGTGCCACCAAACGAGAGATTTCATGTTCAAATTTCAGATGTGCCACAATCATCATCATCATCATCGTCAGAAGAGAGAAGGGTGGATTTGCATGTCGCTTTGAGGGGGCAAATTTCTCAGATTGATGCGGTGATTCGGTTATTGGAGTTCTTGAAACTGGCTCAGAATGTGAGCTTGRTTACCATGASAACAAATACCAATAATGTTGGTCAAGGGAATAATAATTATATTAATCAACTAACATTCAGATTAAGGATTCTTGAGGGAAGTGAATGGGATGTTTCTGCCTTCCAGGAAGCAGTGAAAAGAGTTGTAGGTGATTTGGCACAGTTCCAAGTTGACCATTAG 462 0.3961 MAEIEKLRIRNHELESRLPESSKESSAXDQEISKTMLLVPPNERFHVQISDVPQSSSSSSSEERRVDLHVALRGQISQIDAVIRLLEFLKLAQNVSLXTMXTNTNNVGQGNNNYINQLTFRLRILEGSEWDVSAFQEAVKRVVGDLAQFQVDH* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1219 153 MobiDBLite consensus disorder prediction 12 33 - -
Amo03g1219 153 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 2 146 - -
Amo03g1219 153 Coils Coil 4 24 - -
Amo03g1219 153 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 2 146 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1219 Amo-Chr3 28290568 28293155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1219 2 148 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 44.595 5.19e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1219 - - ahf:112790359 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2569 13 48325517 48330636 Amo03g1219 03 28290568 28293155 hybridization
Amo01g2748 01 98207480 98210116 Amo03g1219 03 28290568 28293155 PCT
Amo03g1219 03 28290568 28293155 Amo01g2748 01 98207480 98210116 PCT