Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1187 ATGTGGAAGGTTCCGTCATATGAAAAAAGTTACTCCCAACCTTCAATGGAGTTGGTTGTAATTGACAAAGATACCCACCAGCATAGCATGCTGATCATATTTAAGAGGGACACATTGGTCTCCGGTGCTGATGACATGGATATTCCAATTGAGTCATTTGATTTCGTGGCAACCAAGAAAATCTTATCATCTGTTAAGGATGACTTATATCTTATTGATTTTGTTGGTCTACTATCCGCAAAGAGTGAGTTGATTCCTTTCGAAAATAAAAATCGGAAGTCCCATTACATGAAAATCGAGCTTGATAGTCTGAGGTGTGATGACTATCACCAACACAAACTACACCACAAGAAATTCCGCCAAAAGCTGATTCGACTTGGTAGCAAGCATAGCACCAGTGTTGATGTTATAGGCCGGGTAGTGAGGCATTCTCCATCTGAAGATTTTCTTAGCCTTACCCCCTATGCTCCCATACATCAGATAAAGCAAACTCTTGAGAAATCAACCTATGTGACATGTGGAACGGTCATCGACATTGACAAAGATCATGCATGGTGGTACAAAGCTTGCAGGCAATGCACACAGGGACTGGAGGCACTTACTGACCAATTTTATTGTGCAAAATGCGATGTTTACTCTACAGTTTTTGCCCCTAGGTTCTGCGTTCAGGTTCGTGTTGTTGATGACTTAGATACTGCAACCTTTGTTCTATTTGAGAATTGTGCGTCAAAGTTCTTAGGCCTATCTGCCGCTGACATCCGCACCAGGCTGCTTGCTAGGGGTTATGGAAGAGACCATTTCCCAGATGAGCTGAATGCACTTATTGGGAAGACACTCCTATTCAAGCTTACTGTTAGGCATGATAGCCTAAATAAATTTCAGCCGTGCGTGATTACAGTTTCAAGGATATGTTCTGATCTAGAGATTATCTCTTCACTTGCTTTAGACAAGAACATTAAATTGAAGTTGACCACGGCAGCGGATGTTCGAAGCGGTGATTTGGTTGGGTCTGGGAGCATACTCGGCGTCCCTGGTTCCACCACCACTCCGAGTGCCAAATCCGTTGTAGTTTCTGATCACGGGACTGCCCACGTGGTTACACAGACTCCTGTAAAGCGGGTATGCATTAGATCCGGCGACGACTTATCATCCTGTGCCACACCCTCTGCCTCCAAGAGTCTTCTCCCTGTGTTTGAGAGCTGCCTCCCAGGGAATGCCACCGACCCTAATGCAGGGGACATGTGA 1245 0.4482 MWKVPSYEKSYSQPSMELVVIDKDTHQHSMLIIFKRDTLVSGADDMDIPIESFDFVATKKILSSVKDDLYLIDFVGLLSAKSELIPFENKNRKSHYMKIELDSLRCDDYHQHKLHHKKFRQKLIRLGSKHSTSVDVIGRVVRHSPSEDFLSLTPYAPIHQIKQTLEKSTYVTCGTVIDIDKDHAWWYKACRQCTQGLEALTDQFYCAKCDVYSTVFAPRFCVQVRVVDDLDTATFVLFENCASKFLGLSAADIRTRLLARGYGRDHFPDELNALIGKTLLFKLTVRHDSLNKFQPCVITVSRICSDLEIISSLALDKNIKLKLTTAADVRSGDLVGSGSILGVPGSTTTPSAKSVVVSDHGTAHVVTQTPVKRVCIRSGDDLSSCATPSASKSLLPVFESCLPGNATDPNAGDM* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1187 414 Pfam Replication factor-A C terminal domain 172 303 IPR013955 -
Amo03g1187 414 SUPERFAMILY Nucleic acid-binding proteins 158 302 IPR012340 -
Amo03g1187 414 Gene3D - 151 312 IPR012340 -
Amo03g1187 414 CDD RPA1_DBD_C 158 291 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1187 Amo-Chr3 27526353 27529033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1187 179 300 Core DNA Replication Machinery Family AT5G08020 25.203 4.28e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1187 - - adu:107458794 556.984