Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1185 ATGATGGCTACTCCAACTAAACCAATGGCCGTAATGTTGTCTGAATCTTTGGAACACAAGGGAAAGGATATCACTGAATTAAATGGTAACATACTTCAATCCCCTATAAGTCAACAGCCCCATAGCTCCTCTGATGGTTCAGTAGCTATTCTTTGGGACATTGAAAACTGTCCTGTTCCAAGTGATGTCCGCCCTGAAGACGTAGCAGGAAATATAAGGATGGCGTTGCAAGTGCATCCAGTAATTCAAGGAACTGTTATGGTATTTTCTGCTTATGGTGACTTCAACGCTTTCCCTAAGCGACTTAGAGAGGGATGTCTAAGAACTGTGTTTAATCTCATTGATCAATCTTGGTTGACATGTTTTTATTTGCTCTTGACAAAACCTCCCCCATCATCTATTATGCTAATATCTGGAGACGTTGACTTTGCCCGAGCACTTCACATTCTTGGACAACGGGGATACACTATAATTCTTTTTGTCTGGGATTGGCCTAGCGTTGCTCGTGGAGAAGGATTTGTTCCCCCGGCAAAGGCTTTAGTACCACCTCGTGGAGGTTCAGTTGAGGTTGCTGGATATTTGATGGGGTGCCATATTAATGACAACTTCGAGGGACAAAATGAGGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGATTATATAACTCAAGGATCTCTATGGTTTCACAATCTCTATCTGAATACAATTGTACCGCATCGAACATGGCTGGCTTACCGACAACTATGAGATCACACAGCCTTCCACCTGGGATGATTGATGTTTCAGGAATATCTATGCCTTCTAGTGACAATAATGAAGGCCAGCTTTGGGGCCCTATGTCTAGCGATTTAAATGTTCTCAAAGGCCACTTGGTAAAGTTGCTTGAACTTTCTGGAGGGTGCCTGCCTCTGGCTCGAGTTCCAACAGAGTATCAGAAAGCTTATGGAAGAACTCTTTATGTATCTGATTATGGAGCAATTAAGTTAGTCAATCTTTTCAAGAAGATGGGTGATACAGTGGCAGTGGAAGGGAAAGGTCAACGTAAATTTGTGTATCTCAGAAACTTCAAGGTAGGCCCGAGCGCTCCCCCATTGGCTCTAGCAAAGAAAGACAAGAAAGGAAAGGGGCTTCCAGAAGAGAATACGAATACTGTCACCGGTGGTGGCTCTTCAGATGAGTTCTCAGATGAAGAAAGACTAGTCATGGAAGAACATGACGAGAGAAATTGTGTAGGAAAGGGCAGTCAAAGGAGAGCAGCTATCAATGACCGTGCTCTTGAGCAGTTCAAGTTCGAGCTTCAAGAGATTCTAGTCAGCTACTCGTGTCGAATATTCCTAGGTTGTTTTGAGGATATATACCAACAAAGGTACAAGAGACAATTGGAATATCAGAGACTTGGAGTGAACAAGTTGGAGGATTTGTTTGAGAAAGTCAATGATATTGTAGTATTGGTTGAGGAACCAGGAAGCAAGAGGAAGTTCCTTGCTCCAGTGGGGATAAAGATGATACGCTGGGAACATTTCTTGCCTCTGCAACCTACCAGCTACTTGGAAGAAATGTAA 1566 0.4298 MMATPTKPMAVMLSESLEHKGKDITELNGNILQSPISQQPHSSSDGSVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPVIQGTVMVFSAYGDFNAFPKRLREGCLRTVFNLIDQSWLTCFYLLLTKPPPSSIMLISGDVDFARALHILGQRGYTIILFVWDWPSVARGEGFVPPAKALVPPRGGSVEVAGYLMGCHINDNFEGQNEEEAIVYRGMSQRLYNSRISMVSQSLSEYNCTASNMAGLPTTMRSHSLPPGMIDVSGISMPSSDNNEGQLWGPMSSDLNVLKGHLVKLLELSGGCLPLARVPTEYQKAYGRTLYVSDYGAIKLVNLFKKMGDTVAVEGKGQRKFVYLRNFKVGPSAPPLALAKKDKKGKGLPEENTNTVTGGGSSDEFSDEERLVMEEHDERNCVGKGSQRRAAINDRALEQFKFELQEILVSYSCRIFLGCFEDIYQQRYKRQLEYQRLGVNKLEDLFEKVNDIVVLVEEPGSKRKFLAPVGIKMIRWEHFLPLQPTSYLEEM* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1185 521 CDD LOTUS 427 490 - -
Amo03g1185 521 ProSiteProfiles OST-type HTH domain profile. 284 356 IPR025605 -
Amo03g1185 521 MobiDBLite consensus disorder prediction 365 395 - -
Amo03g1185 521 Pfam OST-HTH/LOTUS domain 427 491 IPR025605 -
Amo03g1185 521 Pfam OST-HTH/LOTUS domain 287 351 IPR025605 -
Amo03g1185 521 PANTHER LIMKAIN B LKAP 19 503 IPR024768 GO:0005777|GO:0010468|GO:1903231
Amo03g1185 521 CDD PIN_limkain_b1_N_like 48 159 - -
Amo03g1185 521 CDD LOTUS 285 354 - -
Amo03g1185 521 Gene3D - 282 353 IPR041966 -
Amo03g1185 521 Gene3D - 422 495 IPR041966 -
Amo03g1185 521 PANTHER - 19 503 - -
Amo03g1185 521 Pfam NYN domain 48 166 IPR021139 GO:0004540
Amo03g1185 521 ProSiteProfiles OST-type HTH domain profile. 426 500 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1185 Amo-Chr3 27507257 27510248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1185 46 170 C2H2 Transcription Factor Family AT5G61190 31.126 2.49e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1185 - - ahf:112715639 908.672