Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1176 ATGGTTTTTGCGATTGTGATTTATCTTGTAGGAGAATGTAGGGTGCCTGGTGAGGCTGATTGTATCTACTATTTAAGGATTGAATTCTGTGTCTATGGTTCCCGCTGCCGTTTCAACCATCCCCGTGACCAGGCCATGGTAAAATTTATAGTTCGTTTGATTTTTAAAATTGTGGAGGTGATCTAA 186 0.4032 MVFAIVIYLVGECRVPGEADCIYYLRIEFCVYGSRCRFNHPRDQAMVKFIVRLIFKIVEVI* 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1176 61 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 17 42 IPR000571 GO:0046872
Amo03g1176 61 Gene3D - 15 54 - -
Amo03g1176 61 ProSiteProfiles Zinc finger C3H1-type profile. 16 43 IPR000571 GO:0046872
Amo03g1176 61 SUPERFAMILY CCCH zinc finger 19 44 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1176 Amo-Chr3 27291962 27292428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1176 16 47 C2H2 Transcription Factor Family AT5G18550 71.875 1.40e-12 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo03g1176 zf-CCCH 1.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1176 - - adu:110280992 75.485