Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1162 ATGGATAGGGAACTACCTATGCTAGTGACCTACCAAAATTTATTATGCATATCCCATTTTTGCACATACGAAAATCCGCGAGAAGCGACAGGTCGTATTGTATATGCCAATTGCCATTTGGCTAATAAGCCCGTGAATATTGAAGTTCCACAAACGGTACTTCCCAATACTGTATTTGAAGTGGTTGTTCGAATTCCTTATGATATGCAAATCAAACAAGTTCTTGCTAATGGTAAAAAGGGGGCTTTGAATAATGATATGATTCAACCTCAAACCCATTTGAATATAGCTGATAACAGTGGAGCCCGCCAATTGATGTGTATTCAAATCATAGGAGCAGGTAATCGACAATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCGGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTATACGTACTTGTAAAGAACTTAAACGTAGCATTGGCATGATAATACAGTATGATGATAATACCGCGGTTGTGATTGATCAAGAGGAAAATCCAAAAGGAACTCAAATTTTTGGCGCAATCGCCTGGGAATTGAGATAG 582 0.3797 MDRELPMLVTYQNLLCISHFCTYENPREATGRIVYANCHLANKPVNIEVPQTVLPNTVFEVVVRIPYDMQIKQVLANGKKGALNNDMIQPQTHLNIADNSGARQLMCIQIIGAGNRQYASIGDIVVAVIKEAVPNMSLERSEVIRAVIIRTCKELKRSIGMIIQYDDNTAVVIDQEENPKGTQIFGAIAWELR* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1162 193 SUPERFAMILY Ribosomal protein L14 87 193 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo03g1162 193 Pfam Apocytochrome F, N-terminal 22 86 IPR024094 -
Amo03g1162 193 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 87 193 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo03g1162 193 SUPERFAMILY Cytochrome f, large domain 21 87 IPR036826 -
Amo03g1162 193 TIGRFAM rplN_bact: ribosomal protein uL14 87 193 IPR005745 GO:0003735|GO:0006412|GO:0015934
Amo03g1162 193 SMART Ribosomal_L14_2 87 193 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo03g1162 193 PANTHER RIBOSOMAL PROTEIN L14B/L23E-RELATED 87 193 - -
Amo03g1162 193 Gene3D Cytochrome f large domain 22 85 IPR036826 -
Amo03g1162 193 Gene3D Ribosomal protein L14 91 193 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo03g1162 193 ProSiteProfiles Cytochrome f family profile. 22 84 IPR002325 GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361
Amo03g1162 193 PRINTS Cytochrome F signature 23 42 IPR002325 GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361
Amo03g1162 193 PRINTS Cytochrome F signature 43 63 IPR002325 GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361
Amo03g1162 193 PRINTS Cytochrome F signature 64 83 IPR002325 GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361
Amo03g1162 193 Pfam Ribosomal protein L14p/L23e 87 193 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo03g1162 193 Hamap 50S ribosomal protein L14 [rplN]. 87 193 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1162 Amo-Chr3 26574372 26575192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1162 94 191 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 34.314 2.46e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1162 K02874 - csin:14412462 182.57