Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1144 ATGCCTAGAAATGACATTTTCTATGATTCTCCCGGCTTAGTGGATCCACCACCTCCAGCATCTAATGGAGAGCCATCACCTAAGAAAACTGATACAACTTTGTTCTTCCTTGGAGGGATAGTGATGTTCATCATATTGTTGATAGTTTTGGTTGTATTTTGGAAGCGTATCAAAGGGACCAAAAATACAACACCTCCTAAAACTACTAAAGGCAAACAAGGGAAGCTTACTGAAACAGCAGAAGTTATGGATATGATGTTTTCATCTAAACAACAGCAAGGATCCATGGAGTTGTTGAGTGGGAACCTTAGGACAATTAGTTACTTTGACTACCAGATATTAAGAAGAGCAACCAAGAATTTTTCTCCTACTAATCTTCTTGGAAGTGGTGGATTTGGGCCTGTCTATCGGGGAAAGTTGATGGATGGAAAACTAATTGCTCTTAAGAAACTATCTTTGAATAAATCCCAGCAGGGAGAAAGAGAGTTTCTGGCAGAGGTGAGGTTGATCACAAGTATCCAACACAAAAATCTTGTTCGCCTTCTTGGATGTTGCATGGATGGACCACAAAGGATTCTTGTCTATGAATACATGAAGAACAGAAGTTTGGACCTCTTCATATATGGGAACAATGCTGATCGATTCCTGAATTGGAGCACTAGGTTCCAAATTGTTCTAGGCGTGGCAAGGGGATTGCAGTACCTTCATGAGGATTCACATCTAAGAATTGTTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGATAACTTTCATTCCAAGATTGGAGACTTTGGCCTTGCCAGATTCTTCCCTGAAGACCAAGCTTATCTTAGCACACAATTCGCTGGAACATTGGGTTATACAGCACCTGAATACGCTTTAAGAGGAGAATTATCAGAAAAGGCGGATATCTATAGTTTTGGAGTTCTGTTGCTCGAAATTATTTGTTGTAGAAAAAACACAGATCTCACTTTGTCATTGGAAATGCAGTACCTCCCGGAATATGCATGGAAACTTTACGAGAACTCAAAGATTATGGAGCTTGTAGATCCAAAGCTGAAAGAAGAGGGGTTCGTGGAGAAAGATGTTATGCAAGCATTCCACGTGGCATTCCTCTGCCTTCAGCCTCTTGCAAATCTAAGACCTCCGATGTCAGAGATCGTGGCACTCTTGACATTCAAAATTGACATGGTCACAACACCAATGAGGCCTGCGTTTCTTGATCGAAGGCGCAAAACTGATTTTCAAACCCCTTCCCCAGAAGTAATATCCATGCTTTCACATCTCCCATGA 1299 0.4119 MPRNDIFYDSPGLVDPPPPASNGEPSPKKTDTTLFFLGGIVMFIILLIVLVVFWKRIKGTKNTTPPKTTKGKQGKLTETAEVMDMMFSSKQQQGSMELLSGNLRTISYFDYQILRRATKNFSPTNLLGSGGFGPVYRGKLMDGKLIALKKLSLNKSQQGEREFLAEVRLITSIQHKNLVRLLGCCMDGPQRILVYEYMKNRSLDLFIYGNNADRFLNWSTRFQIVLGVARGLQYLHEDSHLRIVHRDIKASNILLDDNFHSKIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYALRGELSEKADIYSFGVLLLEIICCRKNTDLTLSLEMQYLPEYAWKLYENSKIMELVDPKLKEEGFVEKDVMQAFHVAFLCLQPLANLRPPMSEIVALLTFKIDMVTTPMRPAFLDRRRKTDFQTPSPEVISMLSHLP* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1144 432 CDD STKc_IRAK 127 394 - -
Amo03g1144 432 ProSiteProfiles Protein kinase domain profile. 121 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g1144 432 MobiDBLite consensus disorder prediction 1 27 - -
Amo03g1144 432 Pfam Protein tyrosine and serine/threonine kinase 125 392 IPR001245 GO:0004672|GO:0006468
Amo03g1144 432 Gene3D Transferase(Phosphotransferase) domain 1 198 401 - -
Amo03g1144 432 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 100 411 - -
Amo03g1144 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Amo03g1144 432 Gene3D Phosphorylase Kinase; domain 1 80 197 - -
Amo03g1144 432 PANTHER RECEPTOR-LIKE KINASE 100 411 - -
Amo03g1144 432 SUPERFAMILY Protein kinase-like (PK-like) 100 396 IPR011009 -
Amo03g1144 432 SMART serkin_6 121 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1144 Amo-Chr3 26016449 26019339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1144 97 424 Receptor kinase-like Gene Family AT1G56120 44.092 1.15e-96 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo03g1144 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1144 - - adu:107478947 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2784 01 98599878 98602134 Amo03g1144 03 26016449 26019339 PCT
Amo03g1144 03 26016449 26019339 Amo01g2784 01 98599878 98602134 PCT