Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1143 ATGAAGAGGGGAGATGCTACCAGTTGCAGCAAGGGTCTGGGGAGAGAAGGCTGTCTTCCTCATCATAGGGTTGCTATGATGGACTCTAAACTCCTTGCTCCCCATTTTTACCGATGGGAGACCCCATATATCAAAATTAATAAGATTATTAGGGAAGTATTCCATAGAATTGTGAGAAGCAGAACAGAAGGGCGTGATTCTCTTGGAAAAAGCCGAGGATGGAGATCAGAATTGAAAATTAAGCCAACAATAAAAAACTTAGAGGGAGGATTCTTGTATCTAAGAACCGGGATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGGCCTCCCGAAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGCGGTACCACTTTCTTTAATGTTTCTTCCGCAACTTTAGCTTCCAAATGGCGTGGTGAGAGTGAACGCATGGTGCGGTATTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTGTGCAATGCTAGGGGGGCTTCTGGGGAACATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAACAATAGTTCCACAAATGAAGATGGTACCCGTAAAATAGTAATGGTTTTGGCAGCCACAAACTTCCCTTGGGACATAGATGAGGCGCTGAGGCGAAGGCTGGAAAAGCGTATATACATTCCTCTTCTGAATTTTGAGAGTCGTAAAGAGTTGATCCGTATCAATTTGAAGACTGTGGCCCCTGATGTCAATATAGATGACGTGGCTCGCCGTACAGAAGGCTATAGTGGAGATGATTTGACAAATGTATGTTGTGATGCTTCCCTGAATGGTATGAGGCGTAAGATAGTGGGAAAAAAATTTACTTTTTTTTAA 915 0.4273 MKRGDATSCSKGLGREGCLPHHRVAMMDSKLLAPHFYRWETPYIKINKIIREVFHRIVRSRTEGRDSLGKSRGWRSELKIKPTIKNLEGGFLYLRTGIRRPWKGVLMFGPPETGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRYLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLLNFESRKELIRINLKTVAPDVNIDDVARRTEGYSGDDLTNVCCDASLNGMRRKIVGKKFTFF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1143 304 CDD AAA 99 242 - -
Amo03g1143 304 PANTHER AAA DOMAIN-CONTAINING 96 299 - -
Amo03g1143 304 Gene3D - 243 297 - -
Amo03g1143 304 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 96 299 - -
Amo03g1143 304 Pfam ATPase family associated with various cellular activities (AAA) 105 242 IPR003959 GO:0005524|GO:0016887
Amo03g1143 304 Gene3D - 95 242 IPR027417 -
Amo03g1143 304 SMART AAA_5 101 244 IPR003593 -
Amo03g1143 304 Pfam AAA+ lid domain 262 296 IPR041569 -
Amo03g1143 304 ProSitePatterns AAA-protein family signature. 214 233 IPR003960 GO:0005524|GO:0016887
Amo03g1143 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 294 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1143 Amo-Chr3 25965767 25967809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1143 100 296 Calmodulin-binding Proteins AT3G56690 42.079 2.22e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1143 K07767 - aip:107633021 387.111