Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1141 ATGTTTGGGCCTCCCGAAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGCGGTACCACTTTCTTTAATGTTTCTTCCGCAACTTTAGCTTCCAAATGGCGTGGTGAGAGTGAACGCATGGTGTGGTATTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTGTGCAATGCTAGGGGGGCTTCTGGGGAACATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAACAATAGTTCCACAAATGAAGATGGTACCCGTAAAATAGTAATGGTTTTGGCAGCCACAAACTTCCCTTGGGACATAGATGAGGCGCTGAGGCGAAGACTGGAAAAGCGTATATACATTCCTCTTCTGAATTTTGAGAGTCGTAAAGAGTTGATCCGTATCAATTTGAAGACTGTGGCCCCTGATGTCAATATAGATGACGTGACTCGCCGTACAGAAGGCTATAGTGGAGATGATTTGACAAATGTATGTTATAGTGGGAAAACACGCAATGAGATCAAGAACATGCCCAAGGATGAGATTTCAAAGGATCTTGTTGCTATGTGTGACTTTGAGGAAGCTTTGAAGAAAGTCCAGCGAAGTGTTTCTCAGGCTGACATCGAACGCCATATTTTATTACCATTCGGTATCTTTCCCTTCATTGCTATGAGAAGCTGTTTTAGTAACCACACATAA 738 0.4228 MFGPPETGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVWYLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLLNFESRKELIRINLKTVAPDVNIDDVTRRTEGYSGDDLTNVCYSGKTRNEIKNMPKDEISKDLVAMCDFEEALKKVQRSVSQADIERHILLPFGIFPFIAMRSCFSNHT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1141 245 Pfam Vps4 C terminal oligomerisation domain 186 225 IPR015415 -
Amo03g1141 245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 220 IPR027417 -
Amo03g1141 245 Gene3D - 1 223 IPR027417 -
Amo03g1141 245 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 1 224 - -
Amo03g1141 245 SMART AAA_5 1 138 IPR003593 -
Amo03g1141 245 CDD AAA 1 136 - -
Amo03g1141 245 Gene3D - 137 212 - -
Amo03g1141 245 Pfam ATPase family associated with various cellular activities (AAA) 2 136 IPR003959 GO:0005524|GO:0016887
Amo03g1141 245 ProSitePatterns AAA-protein family signature. 108 127 IPR003960 GO:0005524|GO:0016887
Amo03g1141 245 PANTHER AAA DOMAIN-CONTAINING 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1141 Amo-Chr3 25957113 25959340 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1141 1 196 Calmodulin-binding Proteins AT3G56690 40.299 5.07e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1141 K07767 - rcu:8271350 398.667