Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1138 ATGGAAGATGAAAAAGCCTGCATCACAAGTCTAACTCTGGGTTTGGGAATTGGAGGAGGAGGAGGAGGGTATCCCCCAAAGAAGAAGCAGAAAATGATGATGATAATGAAGAACAAGCCTATTAAGCCTGTGCCTTCTCTGGACCTAACTTTTGGTGATGATGAAGCTTTTCCGAAAGAAGCCATTGATGATGATGATGATGATGATGATCGAGAAGAAGGGTTATTCATCTCTTTGAATAATAAGAGAGTCGGTGAAGAACACAGTTACAATTATAATAAGCGCTGCCCGGCGAATGGAAAAAACAGAGATGACAGCTATAATGATGAGAATAATAATAATTATTATTGCAGCAGAAAGAAACTGAGACTCACCAAGGAGCAATCAGCTTTGCTTGAAGAAAATTTCAAGAATCATACCACTCTTAACCAAGCTCAGAAACAAGCACTTGCTAAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACAAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGCTGTGAGAGGTTAACCGATGAGAATCTAAGGTTGAAGAAGGAATTGCAGGAGCTACGTGCAATCAAAGCTGGACCAACACAATCACCAACACCGCCATTGTACATTCAATTACTCTCTTCTAAATCTTCACCCTTGACTATTTGTTCTTCTTGTGAGGAGCTATTGAAGAAGACCAAACAAGAAAATATATAA 753 0.3931 MEDEKACITSLTLGLGIGGGGGGYPPKKKQKMMMIMKNKPIKPVPSLDLTFGDDEAFPKEAIDDDDDDDDREEGLFISLNNKRVGEEHSYNYNKRCPANGKNRDDSYNDENNNNYYCSRKKLRLTKEQSALLEENFKNHTTLNQAQKQALAKQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLTDENLRLKKELQELRAIKAGPTQSPTPPLYIQLLSSKSSPLTICSSCEELLKKTKQENI* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1138 250 SMART halz 175 218 IPR003106 GO:0006355|GO:0043565
Amo03g1138 250 PANTHER - 73 245 - -
Amo03g1138 250 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 73 245 - -
Amo03g1138 250 MobiDBLite consensus disorder prediction 91 112 - -
Amo03g1138 250 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981|GO:0006355
Amo03g1138 250 Coils Coil 174 208 - -
Amo03g1138 250 SMART HOX_1 117 179 IPR001356 GO:0003677
Amo03g1138 250 Pfam Homeobox associated leucine zipper 175 208 IPR003106 GO:0006355|GO:0043565
Amo03g1138 250 Gene3D - 113 180 - -
Amo03g1138 250 SUPERFAMILY Homeodomain-like 111 176 IPR009057 -
Amo03g1138 250 CDD homeodomain 119 176 IPR001356 GO:0003677
Amo03g1138 250 Pfam Homeodomain 119 173 IPR001356 GO:0003677
Amo03g1138 250 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1138 Amo-Chr3 25914048 25916028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1138 108 241 Homeobox Transcription Factor Family AT4G37790 64.179 3.32e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo03g1138 Homeodomain 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1138 K09338 - gmx:100790522 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2786 01 98613765 98614806 Amo03g1138 03 25914048 25916028 PCT
Amo03g1138 03 25914048 25916028 Amo01g2786 01 98613765 98614806 PCT