Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1120 ATGGCAGTGGATCTGGTAGGAGTTCCACGGATGAGGATGGAACAACAAGAACAAGTTGCAATTCAAGAAGCTGCTTCGGCTGGCTTGAAGAGCATGGAGCATCTCATTCGCCTCCTCTCTTCTCAATCTCAATCTCATTCTCCTTCTACTTCCTCTTCCCCTCTCCCCAACAATAATAACAACCTCAACTGCTCCCAACTAACCGACTTCACAGTTTCCAAGTTCAAGCAAGTCATCAACATCCTTAACCGCACTGGCCACGCCCGCTTCCGCCGCGCACCACCACAACAACAGCCTTCCCCTCCCCCTCAGGCCCAGCCTGGAACCACCACCGCCTTCACACTAGATTTCCACAAGCCCACCATTCTGAACTCCAAGCCCGCCGTCAACAAGGATGTCGACCAAGAAATGGAACTTAGTATTTCCCCTCATGTTTCCACCACTACCTCCTCCACCTTCATGTCCTCCATCACCGGCGATGCTAGCGTCTCCGACGGCAAGATTGGCCCCTTCCTTACCCTTCCAGCTCCGCCTCCCCCTCCCGTTGCCTCCGGAAAACCTCCTCTCTCTTCTTCTCACCGGAAAAGGTGCCATGACGCAACCCTCTCCGGAAAAGCCTCCTCCTCCGCTCATTGCCATTGCTCCAAGAGAAGGAAATCACGTGTGAAACGAACGATCCGTGTGCCGGCTATAAGTTCGAAGATCGCCGATATACCGCCTGACGAATTCTCGTGGAGAAAGTACGGTCAGAAACCGATCAAGGGCTCACCTTACCCTCGTGGTTACTATAAGTGCAGCACCGTGAGAGGATGTCCGGCCAGGAAGCATGTGGAGAGAGCACAAGACGATCCGAAGATGCTAATAGTGACGTACGAAGGGGAACACCGTCACAATCCGCAGCCACACTCGCCGGAAACTGCCGGCACTCCCGCCGTCACCTCTGCTGGTGGTTTTAGCCTCCGGTCGTGTTGA 972 0.5432 MAVDLVGVPRMRMEQQEQVAIQEAASAGLKSMEHLIRLLSSQSQSHSPSTSSSPLPNNNNNLNCSQLTDFTVSKFKQVINILNRTGHARFRRAPPQQQPSPPPQAQPGTTTAFTLDFHKPTILNSKPAVNKDVDQEMELSISPHVSTTTSSTFMSSITGDASVSDGKIGPFLTLPAPPPPPVASGKPPLSSSHRKRCHDATLSGKASSSAHCHCSKRRKSRVKRTIRVPAISSKIADIPPDEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHNPQPHSPETAGTPAVTSAGGFSLRSC* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1120 323 MobiDBLite consensus disorder prediction 175 195 - -
Amo03g1120 323 MobiDBLite consensus disorder prediction 91 111 - -
Amo03g1120 323 SMART WRKY_cls 239 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g1120 323 SUPERFAMILY WRKY DNA-binding domain 237 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g1120 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 301 IPR044810 GO:0003700
Amo03g1120 323 MobiDBLite consensus disorder prediction 302 323 - -
Amo03g1120 323 Pfam Plant zinc cluster domain 194 237 IPR018872 -
Amo03g1120 323 Gene3D WRKY domain 227 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g1120 323 MobiDBLite consensus disorder prediction 295 323 - -
Amo03g1120 323 Pfam WRKY DNA -binding domain 241 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g1120 323 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 16 301 - -
Amo03g1120 323 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g1120 323 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1120 Amo-Chr3 25340285 25342906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1120 1 298 WRKY Transcription Factor Family AT2G24570 51.077 1.64e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo03g1120 WRKY 5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1120 - - gmx:732587 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2549 13 46775999 46778313 Amo03g1120 03 25340285 25342906 hybridization
Amo01g2789 01 98642999 98644438 Amo03g1120 03 25340285 25342906 PCT
Amo03g1120 03 25340285 25342906 Amo01g2789 01 98642999 98644438 PCT