Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1088 ATGGACAAGCTCTTTTCATTGAACTGTTGCATTGGTTACATTCTTATTGTTTACTCTCTCTTTGCATGTGTGCATGGCAAAGAACAATTGTCATGCAATCAAACACCATACCCAAATGTTTGCAAGCATTACGTTGAGACGGCTACATATACATTATCGACCCAAGATGAACATGTTTCTTCACCTTCTTATTCGTTCCACGGCATGGCCCTTAAGGTCACCATGGACCAAGCCATTAGAGCCCATGAACTAGTCTCAACCATGGACCCTAAAAACTTCAAAGAAAACAAAAAAGCCAAGATGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACCATTTATCAGCTGAACCGTTCAATGAAATCGAAAAACCTAAACGACAAGTTAACATGGCAAAGTGCTTCCATTGCAAACCACCAAACATGCCAAAACGGTTTCATTGAATTCAACTTGAATTCTCACCTAAACTTGTTCCCAACCATGCTGTCCAACTTCTCCAAATTGCTCAGCAACTCCTTGTCCATCACCAAGGCCGTGTCCATGTTAGAAGCGGAGCAAGAAGTCAGAGGAAGGAGGAGGTTATTGCTTTCATCATCATCAAATCATAACAAACACGGACATGGCTTCCCTGAATGGCTATCGGTTTCCGATAGGAGGCTTCTTCAGGCGGCGACACCACCAAAGGGTGACGTGGTGGTGGCGCAAGACGGGAGTGGGAACTACAAGACGATAACGGAGGGAGTGGCGGCCGCCGCTAGGATTGGGGGAGGAAGGAGGGTTGTGGTGCACGTGAAAGCAGGAGTTTACAAAGAGAATGTTGATATCAAGAAGACAGTGAAGAACATAATGATAGTTGGAGATGGAATTGACGCTACCGTTGTCACTGCTGACGGTAACGCACAAGATGGATCCACCACTTTCCGTTCAGCTACATTTGGGGTTTCCGGTGACGGGTTCATAGCGCGGGACATAACCTTTGAGAACACGGCGGGTCCACGGAAGCACCAGGCGGTGGCTCTCCGGTCCGGCTCCGACCACTCCGTCTTCTACCGCTGCAGCTTCAAGGGCTACCAAGACAGCTTATACGCCTACGCCCAGCGCCAATTCTACCGCGACTGCGACGTGTACGGCACCGTGGACTTCATCTTCGGCGACGCCGCCTGCGTCCTCCAGAACTGCAACATCTACGTCCGAAGACCCATGGGCAACCAGGACATCACCGTCACCGCCCAAGGTAGAACCGATCCCAACGAGAACACCGGCATCGTGATCCACAACTGCCGCATAACTGCTGCCGGCGACATGAGATCCGTTCAGGGCTCCTTCAAGACCTTCCTTGGGCGTCCATGGCAGAAGTACTCAAGAACCGTGATCATGAAGAGCGGCCTAGACGGCTTGATTAACCCGGCCGGTTGGAAACCATGGAGTGGAAGCTTTGCTCTCAGCACACTCTATTATGGTGAGTACATGAACACTGGTCCTGGTGCTAACACTGCTGGCAGGGTTCACTGGCCTGGCTTTCATGTTATTAGTAGTCCCTCTGAAGCTGTCAAGTTTTCTGTTGGTGATTTCTTGGCTGGTGGTTCATGGATTCCCGGCACTGGTGTCCCCTTTGATGCAGGTTTGTAA 1632 0.5 MDKLFSLNCCIGYILIVYSLFACVHGKEQLSCNQTPYPNVCKHYVETATYTLSTQDEHVSSPSYSFHGMALKVTMDQAIRAHELVSTMDPKNFKENKKAKMAWEDCLELYEDTIYQLNRSMKSKNLNDKLTWQSASIANHQTCQNGFIEFNLNSHLNLFPTMLSNFSKLLSNSLSITKAVSMLEAEQEVRGRRRLLLSSSSNHNKHGHGFPEWLSVSDRRLLQAATPPKGDVVVAQDGSGNYKTITEGVAAAARIGGGRRVVVHVKAGVYKENVDIKKTVKNIMIVGDGIDATVVTADGNAQDGSTTFRSATFGVSGDGFIARDITFENTAGPRKHQAVALRSGSDHSVFYRCSFKGYQDSLYAYAQRQFYRDCDVYGTVDFIFGDAACVLQNCNIYVRRPMGNQDITVTAQGRTDPNENTGIVIHNCRITAAGDMRSVQGSFKTFLGRPWQKYSRTVIMKSGLDGLINPAGWKPWSGSFALSTLYYGEYMNTGPGANTAGRVHWPGFHVISSPSEAVKFSVGDFLAGGSWIPGTGVPFDAGL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1088 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Amo03g1088 543 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 23 542 - -
Amo03g1088 543 ProSitePatterns Pectinesterase signature 1. 257 276 IPR018040 -
Amo03g1088 543 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Amo03g1088 543 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
Amo03g1088 543 Gene3D - 227 543 IPR012334 -
Amo03g1088 543 Pfam Pectinesterase 231 528 IPR000070 GO:0030599|GO:0042545
Amo03g1088 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 179 IPR035513 -
Amo03g1088 543 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 179 IPR006501 GO:0004857
Amo03g1088 543 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Amo03g1088 543 SUPERFAMILY Pectin lyase-like 225 542 IPR011050 -
Amo03g1088 543 SMART PMEI_2 25 176 IPR006501 GO:0004857
Amo03g1088 543 PANTHER PECTINESTERASE 23 542 - -
Amo03g1088 543 CDD PMEI-like_3 30 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1088 Amo-Chr3 23884950 23887635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1088 10 543 Carbohydrate Esterase AT1G23200 50.357 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1088 - - lja:Lj4g3v3099630.1 770.77