Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1079 ATGACGACGCCGTTTTCGGCGGGGCTGAAGCACTTGGATGGAGGCGGAGGACTGGCGGTGCTCTCCAATTCCATCGACAAGGTTGATTCGTCCTCCACTTCCTCCTCGACGGCGCTCAGTGGCAGCGTCAAGTGCTCTAAGCTGGTAGACTCGCCCATTTTGATTTTCTTGTTCTTCCACAAGGCGATTCGGAACGAGCTAGACGCGCTGCACCGTCTCGCCATGGCATTCGCCACCGGCAACTCCTCCGATATCCAGCCTATCTCCCAGCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTCCAATGCCGAAGACGAGGTGATTTTTCCAGCCCTTGATATACGTGTGAAGAATGTTGCAAAGACATATTCTCTTGAACACAAAGGTGAAAACAATCTTTTTGATCATCTATTTGAGCTGCTAAATTCTTCCACCCACAACGATGAAAGTTTTGCTAGAGAGTTAGCATCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCAAAGGAAGAGGAGCAGGTATTTCCTTTGCTTATTGAGAAGTTCTCTCTCGAGGAGCAGGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCCGTGAACATGATGACAGAATTTCTTCCATGGCTTTCAAGATCCATATCACCTGATGAACGACTGGATTTGCAGAATTGCTTAATCAAGATAGTTCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCAAGTGGATGGAAGGGAGAAGCAGTGTTAACACAGTTGACAGTTGTGTAAAACATTCTCAAGTTCAATCTAGTAGTAGCCCATCAACTGGAAAAAGGAAATATTCTGGATCTACCCTGGATGACTCTGATGCCATTGGATCACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATTAGAAAAGAGCTAAGTGAGTTAGCAGTGGAGACCAGAAAGATACAATGTTCAGGGGATTTTACAAATCTATCCTCTTTTAATCAAAGATTGCAGTTCATTGCTGAAGTTTGTATATTTCATAGTATTGCTGAGGACAAAGTTATTTTTCCAGCAGTAGATGGAGAATTGTCATTTTTTCAGGAGCATGCTGAAGAAGAAAGCCAGTTTAATGACTTCCGGTGTTTGATTGAAGGTATTCAAAGTGAAGGAGCAACATCTAATTCAGAAGTTGAATTCTTTTCAAAGTTATGCTCACATGCTGATCATATAATGGAAACCATAGAGAGACATTTCCATAATGAAGAAGTTCAGGTCCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAATGCGAACTTCTGTATCAAAGCTTGTGCATGATGCCTCTGAAATTGATTGAGCGCGTRCTTCCATGGTTGGTAGGATCATTAACTGCAGAAGAAACAAAGATGTTTCTGAGAAACATGCAGTTGGCAGCTCCAGAAATGGATTCTGCTATAGTTACACTCTTCTCTGGGTGGGCTTGCAAGGCTCGTATTGAAGGTCTATGTTTGTCTTCCGGTGCGTCAGGTTGCTGTCCTGTTCAAAGACTTTCTGATATTGAAGAAAACATTGCTTGGCCATCCTGCGCTTGTGCTTCCGCATCATCTGTAAGAGATTGTTTAGTATTAGACAAATCAGATGGGAACAGAAAGTCATTCAAGCGAAACCTATTAGAGTCCCACAACCATGGAGATATCACTGAAAATCCAGAGACTGAAAATGTCCAAAAACAATGTTTTGCTACTCGGTCTTGTGTGCCAGGTTTAGGAGTAAACAGTAACAATTTGGGGTTGAGTTCTATTTCTACAGCCAAGTCCTTGCGGTCCTTGTCTTTCAACTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTTGTATGGGAAACAGAAAGCAGCTCATCTGATGTTGGATCTGCACAAAGACCAATTGATACCATATTTAGTTTCCACAAAGCTATACGAAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTAATGGTGATGAGATAGTTCTTCGGCAATTTAGTGGAAGATTTCGTCTTTTATGGGGCTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTGGAGTCAAAAGAGGCACTTCATAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAACAATTATTTGAGGATATTTCCTGCGTTCTTTCTGAGCTTTCTATGCTTCACGAAGCCTTGCAGATGAACCATATGCCAGAGAACTTAAGTGAAAGTAATTTTAGAACATCTGATTCCAAGGGTAGTGAGAATATTAAAAAGTATAATGAACTCGCGACTAAGCTTCAAGGAATGTGCAAATCCATAAGGGTTACTCTGGATCATCATCTTTTCAGGGAGGAGTGTGAACTGTGGCCATTATTTGGGAAACATTTCACTGTAGAAGAACAGGACAAGATAGTGGGACGGATAATTGGAACAACTGGAGCTGAAGTTCTCCAATCAATGTTGCCATGGGTAACTTCCGCACTTACTCAAGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAACTAAAAACACTATGTTCAATGAATGGCTCACTGAATGCTGGAAAGATAGTCCAGCACCTATAACACAGATAGAAACATCAGATCATAACACTTCTCGAAGAGGTGCTGAATATCAAGAAAGCTTGGACCATAATGATCAAATGTTCAAGCCTGGTTGGAAAGACATATTCCGGATGAACCAGAATGAACTTGAGTCAGAGATCCGAAAGGTTTATCGTGATTCAACTCTTGATCCAAGGAGAAAGGCATACCTTGTGCAGAATCTGATGACAAGTCGTTGGATAGCTGCTCAGCAGAAATCACTGAAAGCCATAACTGAAGTAGCATCTAATGGTGAACAAATAGAAGGGCAGTCACCATCATTTCGGAACCCTGATAAACATGTGTATGGGTGTGAGCACTATAAGAGAAATTGTAAGCTACGAGCTGCATGTTGTGGCAAGTTAGTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCGATAGGGCCTAAATGCATGACACCTTCATGTAACGAACTTTCAATGGCAAAATACTATTGCAACATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAACATATGCCGTGTCGGACGAGGGCTTGGGATTGATTATTTCCATTGCATGAAATGCAATTGCTGCTTGGGCATAAGATCACAATCACATAAGTGCCTGGAAAAAGGCTTAGAAATGAATTGCCCAATTTGTTGTGATGATTTATTCACGTCAAGTGCTCCAGTTAGAGCTCTGCCTTGTGGCCATTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCGATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCACTATTGGCTACTGAGGATCTTCCTGAAGAGTATAAGGACCGGTGTCAGGACATACTCTGCCATGACTGTGACAAAAAGGGCACTTCACGCTTCCATTGGTTATACCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTGATTAAGGGTGAGGAATCAAATTCCAGCTGCTCTTACTCTTAG 3711 0.4188 MTTPFSAGLKHLDGGGGLAVLSNSIDKVDSSSTSSSTALSGSVKCSKLVDSPILIFLFFHKAIRNELDALHRLAMAFATGNSSDIQPISQRYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAKTYSLEHKGENNLFDHLFELLNSSTHNDESFARELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMTEFLPWLSRSISPDERLDLQNCLIKIVPEEKLLQKVIFKWMEGRSSVNTVDSCVKHSQVQSSSSPSTGKRKYSGSTLDDSDAIGSHPIDEILLWHNAIRKELSELAVETRKIQCSGDFTNLSSFNQRLQFIAEVCIFHSIAEDKVIFPAVDGELSFFQEHAEEESQFNDFRCLIEGIQSEGATSNSEVEFFSKLCSHADHIMETIERHFHNEEVQVLPLARKHFSFKRQCELLYQSLCMMPLKLIERVLPWLVGSLTAEETKMFLRNMQLAAPEMDSAIVTLFSGWACKARIEGLCLSSGASGCCPVQRLSDIEENIAWPSCACASASSVRDCLVLDKSDGNRKSFKRNLLESHNHGDITENPETENVQKQCFATRSCVPGLGVNSNNLGLSSISTAKSLRSLSFNSSAPSLNSSLFVWETESSSSDVGSAQRPIDTIFSFHKAIRKDLEYLDVESGKLSNGDEIVLRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSELSMLHEALQMNHMPENLSESNFRTSDSKGSENIKKYNELATKLQGMCKSIRVTLDHHLFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLTECWKDSPAPITQIETSDHNTSRRGAEYQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKSLKAITEVASNGEQIEGQSPSFRNPDKHVYGCEHYKRNCKLRAACCGKLVTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPKCMTPSCNELSMAKYYCNICKFFDDERNVYHCPFCNICRVGRGLGIDYFHCMKCNCCLGIRSQSHKCLEKGLEMNCPICCDDLFTSSAPVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEDLPEEYKDRCQDILCHDCDKKGTSRFHWLYHKCGFCGSYNTRVIKGEESNSSCSYS* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1079 1236 CDD Hr-like 297 426 - -
Amo03g1079 1236 Pfam CHY zinc finger 989 1064 IPR008913 GO:0008270
Amo03g1079 1236 Pfam Zinc-ribbon 1165 1222 IPR039512 -
Amo03g1079 1236 Pfam Ring finger domain 1117 1159 IPR001841 -
Amo03g1079 1236 CDD Hr-like 55 181 - -
Amo03g1079 1236 ProSiteProfiles Zinc finger CTCHY-type profile. 1054 1117 IPR017921 -
Amo03g1079 1236 PANTHER CHY ZINC FINGER PROTEIN 37 1233 - -
Amo03g1079 1236 SUPERFAMILY RING/U-box 1115 1164 - -
Amo03g1079 1236 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 37 1233 - -
Amo03g1079 1236 CDD RING-H2_Pirh2 1117 1160 - -
Amo03g1079 1236 Gene3D nmb1532 protein domain like 50 201 - -
Amo03g1079 1236 Gene3D nmb1532 protein domain like 297 444 - -
Amo03g1079 1236 SUPERFAMILY CHY zinc finger-like 984 1045 IPR037274 GO:0008270
Amo03g1079 1236 SUPERFAMILY Zinc hairpin stack 1055 1111 IPR037275 -
Amo03g1079 1236 Gene3D - 1189 1230 - -
Amo03g1079 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1113 1162 IPR013083 -
Amo03g1079 1236 Gene3D nmb1532 protein domain like 638 868 - -
Amo03g1079 1236 MobiDBLite consensus disorder prediction 266 286 - -
Amo03g1079 1236 ProSiteProfiles Zinc finger RING-type profile. 1118 1160 IPR001841 -
Amo03g1079 1236 SMART ring_2 1118 1159 IPR001841 -
Amo03g1079 1236 CDD Hr-like 644 804 - -
Amo03g1079 1236 MobiDBLite consensus disorder prediction 266 281 - -
Amo03g1079 1236 Pfam Hemerythrin HHE cation binding domain 642 805 IPR012312 -
Amo03g1079 1236 Pfam Hemerythrin HHE cation binding domain 294 428 IPR012312 -
Amo03g1079 1236 Pfam Hemerythrin HHE cation binding domain 57 183 IPR012312 -
Amo03g1079 1236 ProSiteProfiles Zinc finger CHY-type profile. 982 1051 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1079 Amo-Chr3 23531840 23539367 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1079 51 1236 C2H2 Transcription Factor Family AT3G18290 67.024 0.0 1637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1079 K16276 - gmx:100801725 2109.72