Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1072 ATGTTCACATCAAGGAAAAAAATCCACAAAGACAAGGATGCTGAGCCAACTGAGTTTGAAGAGTCAGTTGGGCAGGCATTGTTTGATCTTGAAAACACCAACCAAGATCTTAAGAGTGACCTCAAGGATTTATATATTAATTCCGCAGTTCAAGTTGATGTTTCTGGGAACCGCAAGGCTGTTGTTATCCATGTCCCTTACAGATTGAGGAAAGGCTTCAGGAAGATTCATGTTAAGCTTGTTAGGGAGCTTGAGAAGAAGTTTAGCGGCAAGGATGTAGTCTTGCTTGCCACCCGGAGGATAGTGAGACCTCCAAAGAAGGGTTCTGCCGTTCAACGCCCCCGAACCCGCACCTTGACTGCTGTTCACGAGGCAATGATGGAGGACATTGTATTGCCTGCTGAGATTGTTGGAAAGCGTGTGAGGTATAGACTGGATGGATCCAAAGTTATGAAGGTTTTCTTGGATCCAAAGGAGCGAAACAACACGGAGTACAAGTTGGAGACCTTTTCTGCTGTGTACAGGAAGCTGTCTGGCAAAGATGTCGTGTTCGAGTATCCCATAGCAGAGAATTAG 576 0.4549 MFTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQDLKSDLKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVKLVRELEKKFSGKDVVLLATRRIVRPPKKGSAVQRPRTRTLTAVHEAMMEDIVLPAEIVGKRVRYRLDGSKVMKVFLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPIAEN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1072 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Amo03g1072 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Amo03g1072 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 190 - -
Amo03g1072 191 Coils Coil 27 47 - -
Amo03g1072 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1072 Amo-Chr3 23449300 23452431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1072 1 190 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 76.842 1.50e-112 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1072 K02993 - gmx:100527642 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2507 13 45283241 45286980 Amo03g1072 03 23449300 23452431 hybridization