Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1066 ATGGCTGAATTCACAGCAGATTTGAATAGTTTTAGACCTTCTTTTCCTTTCTTAGATATTAACACTATGGAACTAACAAATGGATTCAAAGGGGTGATGAATGTGAATTCACATATCCTAAACAACAACTCAAGTTTGCATATGCAGGACTTTTTTATGCCTTTCAACACAAGTCACAGCTTCACAACTTCTCCAGAATCTGAATTTTCAGGCCTTGTCCATTATGTTAATCACAGTAATCTTCCATCTTCACTTACCATATCTTCAGCAGATAATGAAATCCAACAAGGTAAAAAGCGCAAAGCGGTTGATACGCCGGACACCATGTCAGCAAACTCAACTCCTGCAGTATCTGAGAGTGGCAGCAACACAAAAAATAACTATGGAAGAGGGAAGAGAGGAAAAAAGAATGAAACAGAAGAAAAGAAATCAAAGGAAGTAGTTCATGTTAGAGCAAGAAGAGGCCAAGCTACTGATACTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAACTTAAATTCTTACAGAACATTGTCCCGGGATGTTATAAGACTATGGGAATGGCAATAATGTTGGAAGAGATCATAAACTATGTTCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCTATGAAGCTTAATGCAGCAAGTGCTTTCTATGACTTCAACTCACAGACAGATGCTTTCGAAACAGTGCTGAGAGCAAGGGCATCAGAAGCAAAAGAGTTGGTGAAGAATGAGAGAGAGGAACATGGCATTCAACCAACTTGGCCTTATTGCTTTTAA 798 0.3897 MAEFTADLNSFRPSFPFLDINTMELTNGFKGVMNVNSHILNNNSSLHMQDFFMPFNTSHSFTTSPESEFSGLVHYVNHSNLPSSLTISSADNEIQQGKKRKAVDTPDTMSANSTPAVSESGSNTKNNYGRGKRGKKNETEEKKSKEVVHVRARRGQATDTHSLAERVRRGKINEKLKFLQNIVPGCYKTMGMAIMLEEIINYVQSLQHQVEFLSMKLNAASAFYDFNSQTDAFETVLRARASEAKELVKNEREEHGIQPTWPYCF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1066 265 MobiDBLite consensus disorder prediction 106 128 - -
Amo03g1066 265 CDD bHLH_AtBPE_like 146 231 - -
Amo03g1066 265 MobiDBLite consensus disorder prediction 92 159 - -
Amo03g1066 265 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Amo03g1066 265 PANTHER TRANSCRIPTION FACTOR BEE 1 2 256 - -
Amo03g1066 265 SMART finulus 162 212 IPR011598 GO:0046983
Amo03g1066 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983
Amo03g1066 265 MobiDBLite consensus disorder prediction 131 159 - -
Amo03g1066 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 223 IPR036638 GO:0046983
Amo03g1066 265 Gene3D - 156 219 IPR036638 GO:0046983
Amo03g1066 265 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 256 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1066 Amo-Chr3 23345266 23346724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1066 56 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 51.351 1.02e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g1066 HLH 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1066 - - aprc:113855800 304.293