Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1059 ATGTTTGGATTTAGAAAAGCAGCGCCAGCCCCAAATCCTGCTCCTTCTGGTTCAGATCTTGAACCGGAAAAGAAGACAAACCTTACTACAGACAAAAGAACTTCTTCAGAACCTGTCATTGCACCAAAATCCAAAGGAAGCTATTTTGACGATGAGGATGACGACGACGATTATTGGGGGCGAAAGCCTACCACAACCGCATCGTCGCGCACCTCGGCTGCTGCGAAAAACAAGTATAAAAATGATTTTCGCGATTCCGGAGGTCTAGAGAATCAAAGTGTTCAGGAATTGGAGGGCTATGCAGTGTACAAAGCTGAAGAGACCACACAAAGTGTTAACAATTTGGTGAAGATTGCTGAGGACATAAAGGGTGATGCCACAAGGACCCTTGATATGTTGCACCAACAGGGTGAGCAAATAACGAGAACTCACAATATGGTTGTTGAAACTGAAAGGGACTTGAGTCGGGGTGAAAAACTCCTAAACAATCTTGGTGGCATGTTCTCTAAACCTTGGAGGCCAAAGAAGACAAAGGAGATTACAGGCCCTAAAATCTCACTAGACAATACAAATAAAAAGGGGGAAGCAAATAAGGAAGAGAGGGAGAAGTTGGGGTTGGCTCCTGGGCAAAAGGGACGCTCTGGCTCTAACACACCCCATCCTGAACCAACCAATGCCTACCAACAAATAGAAAATGAAAAAGCAAAACAAGACGAAGGACTATCAGATCTCAGTAATATCTTAGACGATTTGAAGGGCATGGCAGTTGATATGGGAAGTGAACTTGACAGGCAAAATAAAGCTCTTGATCATCTAAGTGATGATGTGGATGAGTTGAACTCTCGAGTTAAAGGTGCAAACCAACGTGCACGCAAGTTATTAGCAAAGTGA 891 0.4388 MFGFRKAAPAPNPAPSGSDLEPEKKTNLTTDKRTSSEPVIAPKSKGSYFDDEDDDDDYWGRKPTTTASSRTSAAAKNKYKNDFRDSGGLENQSVQELEGYAVYKAEETTQSVNNLVKIAEDIKGDATRTLDMLHQQGEQITRTHNMVVETERDLSRGEKLLNNLGGMFSKPWRPKKTKEITGPKISLDNTNKKGEANKEEREKLGLAPGQKGRSGSNTPHPEPTNAYQQIENEKAKQDEGLSDLSNILDDLKGMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARKLLAK* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1059 296 Gene3D - 88 166 - -
Amo03g1059 296 SUPERFAMILY SNARE fusion complex 226 294 - -
Amo03g1059 296 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 296 - -
Amo03g1059 296 SMART tSNARE_6 226 293 IPR000727 -
Amo03g1059 296 SMART tSNARE_6 95 164 IPR000727 -
Amo03g1059 296 MobiDBLite consensus disorder prediction 191 207 - -
Amo03g1059 296 SUPERFAMILY SNARE fusion complex 90 165 - -
Amo03g1059 296 MobiDBLite consensus disorder prediction 1 90 - -
Amo03g1059 296 Coils Coil 262 296 - -
Amo03g1059 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Amo03g1059 296 MobiDBLite consensus disorder prediction 162 240 - -
Amo03g1059 296 Gene3D - 217 295 - -
Amo03g1059 296 CDD SNARE_Qc 234 292 - -
Amo03g1059 296 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 296 - -
Amo03g1059 296 CDD SNARE_SNAP25N_23N_29N_SEC9N 100 163 IPR044766 GO:0005484|GO:0031201
Amo03g1059 296 MobiDBLite consensus disorder prediction 211 231 - -
Amo03g1059 296 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1059 Amo-Chr3 23194579 23199607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1059 222 291 SNARE and Associated Proteins AT3G09740 41.429 3.22e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1059 K18211 - gmx:100806781 404.06