Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1029 ATGAAAGACGCAGCTGCAACTGCAACAAGTGCAAGTGCCTTGGGTGCCAAGACGGCCAGGGCTTGCGACAGCTGCTTACGGAGGAGGGCACGGTGGTTCTGCGCTGCAGATGATGCATTCCTCTGCCATGCCTGTGACAACTTGGTCCACTCCGCGAACCAGTTAGCGAGCAGGCACGAGAGGGTTAGGCTTCAAACGGCGTCGTGCAAGCTCACCAACAAGGTAACCACCGCACACGCATGGCACAGTGGGTTCACGCGCAAGGCAAGAACACCACGCCACAACAACAACAAGCACTTAGCCTTGCAACAAAGGCTTAAGGACCAAGTTTTATTCAACACCGCTTGTGTTCTTCCCGTTGTGCCGGAGCTTGGAGTTGAAGAAACAGCTCTTCTGGATGATCATGAGAGCGAGGAGCAGCTGCTGTGTCGCGTCCCCGTGTTTGACCCTTTCGATGCAGAGCTTTGCAATGATGTGTACAGTGAAGTCAGGGACGAGAAGAATCACGAAGAACGAGGTTGTTGTGATGACTTGGAGAGCTTCTCTGAGTTTCTGCCATCGGATATGGATCTTGCTGAGTTTGCTGCTGATGTCGAAAACCTGCTTGGAAGTGGGATTGATGAGGATTCATTAGGAATTGATTGCAAAGAAGAAGTTCAAAGAGAAGATGCATGCGTTAGAGCCGAAACCACCATTAATATTAAGGAGGGTGCAATGGTAATGGTAAAGGTGAAGGATGAGGAGCTTGATTCAGATACAGCAAGTCATCTTCAGTCAGTTTTTGACATCACAAACGATGACGAATTTGATTGGAATATCGAATCGGTGCTCTTATCGACGGAGGAAAAGGCGACCGCTGCCGCACCAGTAAGTAATAATAGTGATAGTGTTAGTGAAGAGAAAAAGAGGGACATATTTTTGAGACTGAACTATGAAGAGGTTATAAATGCTTGGGCAAGCCAAGGTTCTCCGTGGACAACAGGAACCCCTCCTCCGTTCAACCCTCATGATCATTCCTGGCCAAATTTCTTGGATCCAAGTGGCGGAGATGTTCATCAGTGCTCTTCTTATGGGGATGGGAGAAGCGTGAGGGGACATGTTGGAGATGGGGGAAGAGAAGCAAGAGTATCTAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCTAAGAAGATAAGATATGAAGTGAGGAAACTGAATGCGGAGAAGAGACCTAGAATGAAAGGTAGATTTGTCAAGAGATCATGCCTTGTTGGAGGAGCCACAACTTCCTTTCAAACCTCCTATAACTGA 1293 0.4811 MKDAAATATSASALGAKTARACDSCLRRRARWFCAADDAFLCHACDNLVHSANQLASRHERVRLQTASCKLTNKVTTAHAWHSGFTRKARTPRHNNNKHLALQQRLKDQVLFNTACVLPVVPELGVEETALLDDHESEEQLLCRVPVFDPFDAELCNDVYSEVRDEKNHEERGCCDDLESFSEFLPSDMDLAEFAADVENLLGSGIDEDSLGIDCKEEVQREDACVRAETTINIKEGAMVMVKVKDEELDSDTASHLQSVFDITNDDEFDWNIESVLLSTEEKATAAAPVSNNSDSVSEEKKRDIFLRLNYEEVINAWASQGSPWTTGTPPPFNPHDHSWPNFLDPSGGDVHQCSSYGDGRSVRGHVGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSCLVGGATTSFQTSYN* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1029 430 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Amo03g1029 430 ProSiteProfiles CCT domain profile. 372 414 IPR010402 GO:0005515
Amo03g1029 430 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 9 420 - -
Amo03g1029 430 CDD Bbox1_BBX-like 21 64 - -
Amo03g1029 430 Pfam B-box zinc finger 19 62 IPR000315 GO:0008270
Amo03g1029 430 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 420 - -
Amo03g1029 430 Pfam CCT motif 372 414 IPR010402 GO:0005515
Amo03g1029 430 SMART bboxneu5 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1029 Amo-Chr3 22251007 22252387 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1029 11 414 C2C2-CO-like Transcription Factor Family AT1G25440 45.070 8.38e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo03g1029 zf-B_box 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1029 - - adu:107478728 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2475 13 44499266 44501182 Amo03g1029 03 22251007 22252387 hybridization