LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo03g1027	ATGTTGCATTTCCGTTTCTTCAAGGCTATACTCAAAACTAATCTTCAAAGGATTAAAATACCCAATAAGTTTTCAAGGAGACATGGAAGCGCTCTTTCAAATCCAGTGTTTCTTAAGCCTCCAGATGGCACTCTATGGAAAGTGTATTGGACAAAAAAGAATAGTGATGAAGTTTGGTTTGTAAAAGGATGGAAGGAATTTACCAAAAACTACTCTCTTAATGAAGGACATTTAGTTGTGTTTAAATATGAAGAAACTTCTCAGTTTGATGTAATCATACTTGAGATAAATGATCTAGAAAGGGTTGGTGCATTTGTTCTGTATTGTTGTGAGTGTATTCAAGCTTTCAACAAGCATATTCATCCCAGAAATTTCAACAAGCATATTCATAACACTGTAACAGCAAGAAGTGCAGAACAGAGCAGACTACAGAGGAGAACTGGAGCTAACCTAGTTCAGGCCGGCGGTGAGACGAAGAGGATGACGGCGGGCGGCAGGCGGCTGGCGGCTGGGTGA	516	0.4012	MLHFRFFKAILKTNLQRIKIPNKFSRRHGSALSNPVFLKPPDGTLWKVYWTKKNSDEVWFVKGWKEFTKNYSLNEGHLVVFKYEETSQFDVIILEINDLERVGAFVLYCCECIQAFNKHIHPRNFNKHIHNTVTARSAEQSRLQRRTGANLVQAGGETKRMTAGGRRLAAG*	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo03g1027	171	Pfam	B3 DNA binding domain	13	91	IPR003340	GO:0003677
	Amo03g1027	171	CDD	B3_DNA	4	94	IPR003340	GO:0003677
	Amo03g1027	171	SUPERFAMILY	DNA-binding pseudobarrel domain	5	96	IPR015300	-
	Amo03g1027	171	PANTHER	TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED	5	98	-	-
	Amo03g1027	171	PANTHER	B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED	5	98	IPR039218	-
	Amo03g1027	171	ProSiteProfiles	B3 DNA-binding domain profile.	3	97	IPR003340	GO:0003677
	Amo03g1027	171	SMART	B3_2	6	97	IPR003340	GO:0003677
	Amo03g1027	171	Gene3D	-	2	97	IPR015300	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo03g1027	Amo-Chr3	22142988	22144257	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo03g1027	6	100	B3 DNA Binding Superfamily	AT3G18990	37.113	9.42e-16	71.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Amo03g1027		B3	3.9e-14	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo03g1027	-		-	lang:109346569	143.28