Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1026 ATGAGCACAGGCATGAAAGACGCAGCTGCAACTGCAACAAGTGCAAGTGCCTTGGGTGCCAAGACGGCCAGGGCTTGCGACAGCTGCTTACGGAGGAGGGCACGGTGGTTCTGCGCTGCAGATGATGCATTCCTCTGCCATGCCTGTGACAACTTGGTCCACTCCGCGAACCAGTTAGCGAGCAGGCACGAGAGGGTTAGGCTTCAAACGGCGTCGTGCAAGCTCACCAACAAGGTAACCACCGCACACGCATGGCACAGTGGGTTCACGCGCAAGGCAAGAACACCACGCCACAACAACAACAAGCACTTAGCCTTGCAACAAAGGCTTAAGGACCAAGTTTTATTCAACACCGCTTGTGTTCTTCCCGTTGTGCCGGAGCTTGGAGTTGAAGAAACAGCTCTTCTGGATGATCATGAGAGCGAGGAGCAGCTGCTGTGTCGCGTCCCCGTGTTTGACCCTTTCGATGCAGAGCTTTGCAATGATGTGTACAGTGAAGTCAGGGACGAGAAGAATCACGAAGAACGAGGTTGTTGTGATGACTTGGAGAGCTTCTCTGAGTTTCTGCCATCGGATATGGATCTTGCTGAGTTTGCTGCTGATGTCGAAAACCTGCTTGGAAGTGGGATTGATGAGGATTCATTAGGAATTGATTGCAAAGAAGAAGTTCAAAGAGAAGATGCATGCGTTAGAGCCGAAACCACCATTAATATTAAGGAGGGTGCAATGGTAATGGTAAAGGTGAAGGATGAGGAGCTTGATTCAGATACAGCAAGTCATCTTCAGTCAGTTTTTGACATCACAAACGATGACGAATTTGATTGGAATATCGAATCGGTGCTCTTATCGACGGAGGAAAAGGCGACCGCTGCCGCACCAGTAAGTAATAATAGTGATAGTGTTAGTGAAGAGAAAAAGAGGGACATATTTTTGAGACTGAACTATGAAGAGGTTATAAATGCTTGGGCAAGCCAAGGTTCTCCGTGGACAACAGGAACCCCTCCTCCGTTCAACCCTCATGATCATTCCTGGCCAAATTTCTTGGATCCAAGTGGCGGAGATGTTCATCAGTGCTCTTCTTATGGGGATGGGAGAAGCGTGAGGGGACATGTTGGAGATGGGGGAAGAGAAGCAAGAGTATCTAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCTAAGAAGATAAGATATGAAGTGAGGAAACTGAATGCGGAGAAGAGACCTAGAATGAAAGGTAGATTTGTCAAGAGATCATGCCTTGTTGGAGGAGCCACAACTTCCTTTCAAACCTCCTATAACTGA 1305 0.482 MSTGMKDAAATATSASALGAKTARACDSCLRRRARWFCAADDAFLCHACDNLVHSANQLASRHERVRLQTASCKLTNKVTTAHAWHSGFTRKARTPRHNNNKHLALQQRLKDQVLFNTACVLPVVPELGVEETALLDDHESEEQLLCRVPVFDPFDAELCNDVYSEVRDEKNHEERGCCDDLESFSEFLPSDMDLAEFAADVENLLGSGIDEDSLGIDCKEEVQREDACVRAETTINIKEGAMVMVKVKDEELDSDTASHLQSVFDITNDDEFDWNIESVLLSTEEKATAAAPVSNNSDSVSEEKKRDIFLRLNYEEVINAWASQGSPWTTGTPPPFNPHDHSWPNFLDPSGGDVHQCSSYGDGRSVRGHVGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSCLVGGATTSFQTSYN* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1026 434 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 13 424 - -
Amo03g1026 434 Pfam CCT motif 376 418 IPR010402 GO:0005515
Amo03g1026 434 Pfam B-box zinc finger 23 66 IPR000315 GO:0008270
Amo03g1026 434 CDD Bbox1_BBX-like 25 68 - -
Amo03g1026 434 SMART bboxneu5 21 68 IPR000315 GO:0008270
Amo03g1026 434 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 13 424 - -
Amo03g1026 434 ProSiteProfiles Zinc finger B-box type profile. 21 68 IPR000315 GO:0008270
Amo03g1026 434 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1026 Amo-Chr3 22118038 22119965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1026 15 418 C2C2-CO-like Transcription Factor Family AT1G25440 45.070 6.13e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo03g1026 zf-B_box 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1026 - - adu:107478728 848.58