Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1011 ATGGACTTAGAAGAGAAATCCGTTTGTAAAGTTTCTGGTGTGCAAAGCCTCTCTTCCAGTGTGCAAAGTACTCCCGAAAAAAATGGCCATTCTGATGATGCTTCAAGAAGTTCAGAACTCCTTCAAGAGTTTGTGAAGGCTGGTCCGAAGAAGGAACTTCTTCCAACGTGCTTTGCTAAGGACCATAAGAAAGTTACTGCAAAAGGAAGGATGGCTGAAACTAAGTCAACTGGTAAGACAACTAAGAAACAAGATTCAAAAAAAGCTTCCAATGTTGGAAATCCGCCTTTCAGGAAGCAAAATCGGAAGGCTGAAAACCCCATGCGGATCTTTCCTAATCCTGACCAGACTTCTGAATCTGGACATTCTAACTCTTGGATCTGCAAAAATGCTGCCTGTAGGGCTGTTCTATCTATAGATGACACATTTTGTAGACGGTGTTCTTGTTGTATTTGTCACCTTTTTGATGATAACAAAGATCCTAGTCTTTGGTTGGTATGCTTGTCTGAATCTACTCAAGGGGACTATTGTGGATTGTCTTGCCATATCGAGTGTGCTCTCAAACATGAAAAAGTAGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCATCATGTGGCAAAGTTACTGGGATACTTGAATGCTGGAAGAAACAGCTAACTATTGCAAAGGATGCTAGACGTGTAGATGCACTCTGTCACAGGATATATTTGAGCTACAGGCTCTTGGATGGGACTTTGAAATTTAGAGAGTTGCATGAACTGGTACAAAAGGCGAAGGCTAAACTGGAGACAGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAGATGGCACGAGGCATTGTCAGCAGACTCCCTATAGCTGGTGATGTGCAGAAATTCTGCACTCTTGCTATTGAGAAAGCTGACAGATGGCTGGCTAGTGTTCCAAATGTGAATCCTGATTCCAGAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAGCTTCCTCTGTCAAAATCATTTTACTTGAAGTATCAAATGTGGCGGCTGAGAACAGTAAGGGATACAAGCTTTGGTATTACAAGAGTAGGGAAGAATCACACACCAAAGATCCTGTTTCTGTGATTCCTAGATCACAGAGGAGGGTTTTGATATCCAACCTTCAGCCTTGTACAGAATATACTTTCCGCATTGTATCATATACGGATTCAGGAGACCTGGGTCATTCTGAGGCTAAATGTTTCACGAAGAGCATCGAGATAATTCAAAACGTTCCTCCATCTGTTGCTATGGTACGAAAGAGAGAGAATTTTCAAATTGGGGCTTGTTCTTCTGGCTCGAAGATTGAGCCCAATCGCACTATGAAAGACTCTGGATTTAAGGTTCGAGACCTTGGAAAAATTTTGCATCTAGCTTGGGCTCAGGAACAAGGTTATCTTGAAGATATTTGCTGTGCTGATATGAAAACGTGCTGTGGACAAAGTGAAATGGTCAAGCCTAAAACTCCAGAAGAGCAGTTGCCTTCAGTTCCACGAGGCCTTGATTTAAATGTTGTTTCAGTTCCGGATTTAAATGAAGAACTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTGATGCAGGCTGTTGAGGCAGATGATGATGCTGCCTCTCATGATCTTGAGAAGAATGGTTTAGCAAGATCCCATGGGAGTGGTGATTCCCAAACCTGGACCCATCGCCCAACAGGGGAAGTGCCAGCTGTCGACTCTCGCATAGATGTGACTAGAAAAAGGATAGCAAGCACGAATGAAGAGATACATGATTGTGACAGTACTTTGATAAATGGTTCTCCTGTACGCATATCTGATGGTTCATCTTCCCTGGATGAGAACTTCGAGTATTGCGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATAAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTCTGAGGTCAACAGACCAAGAACGCAGGGTGGTTAACACCTTCGTTCAAACTCTCATTGATGATCCAAGCAGTTTGGCAGGGCAACTTGTTGACTCTTTTTATGACATTATATCCAACAAGAGGCCAAGAACTGGATTCTGTAATAAAGCTTTGGCATCAAACTAA 2160 0.4255 MDLEEKSVCKVSGVQSLSSSVQSTPEKNGHSDDASRSSELLQEFVKAGPKKELLPTCFAKDHKKVTAKGRMAETKSTGKTTKKQDSKKASNVGNPPFRKQNRKAENPMRIFPNPDQTSESGHSNSWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCLSESTQGDYCGLSCHIECALKHEKVGVVDHGQLMQLDGGYCCASCGKVTGILECWKKQLTIAKDARRVDALCHRIYLSYRLLDGTLKFRELHELVQKAKAKLETEVGPVNGVSAKMARGIVSRLPIAGDVQKFCTLAIEKADRWLASVPNVNPDSREGSLPAACKFVFEEVTASSVKIILLEVSNVAAENSKGYKLWYYKSREESHTKDPVSVIPRSQRRVLISNLQPCTEYTFRIVSYTDSGDLGHSEAKCFTKSIEIIQNVPPSVAMVRKRENFQIGACSSGSKIEPNRTMKDSGFKVRDLGKILHLAWAQEQGYLEDICCADMKTCCGQSEMVKPKTPEEQLPSVPRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLMQAVEADDDAASHDLEKNGLARSHGSGDSQTWTHRPTGEVPAVDSRIDVTRKRIASTNEEIHDCDSTLINGSPVRISDGSSSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTDQERRVVNTFVQTLIDDPSSLAGQLVDSFYDIISNKRPRTGFCNKALASN* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1011 719 Pfam Fibronectin type III domain 333 413 IPR003961 GO:0005515
Amo03g1011 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Amo03g1011 719 MobiDBLite consensus disorder prediction 63 86 - -
Amo03g1011 719 PANTHER VIN3-LIKE PROTEIN 1 56 715 - -
Amo03g1011 719 Gene3D Immunoglobulins 314 417 IPR013783 -
Amo03g1011 719 MobiDBLite consensus disorder prediction 1 43 - -
Amo03g1011 719 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Amo03g1011 719 CDD FN3 332 411 IPR003961 GO:0005515
Amo03g1011 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 56 715 IPR044514 GO:0010048|GO:0040029
Amo03g1011 719 MobiDBLite consensus disorder prediction 567 589 - -
Amo03g1011 719 SUPERFAMILY Fibronectin type III 335 416 IPR036116 GO:0005515
Amo03g1011 719 MobiDBLite consensus disorder prediction 11 28 - -
Amo03g1011 719 MobiDBLite consensus disorder prediction 63 122 - -
Amo03g1011 719 CDD PHD_VIN3_plant 148 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1011 Amo-Chr3 21868186 21874597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1011 124 710 PHD Gene Family AT3G24440 49.500 1.16e-180 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1011 - - gmx:100780157 1195.65