Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0999 ATGAAGAAGGAAAATCAAAACGTTTCCGTTGTAGCTGTCCTCACTGCATTGTTGTTTGCAGGCACATTGTCATCAGTGTGTGCCTCCCACTCCAAGCAAACAAGCTTCAGTGGCGAACTCAGCCATGTGGAAACCATGTACATCAAGCAGCGGCAGTTGCTCTACTACAGGGACGAGTTCGGTGACAGAGGAGAGAATGTCACCGTAGACCCTTCCCTGGTGTTTGAGAACCAGCGCATCAGAAACGCCTACATTGCATTGCAAGCATGGAAGCAAGCCATTGTTTCCGATCCTCTCAACTTCACAGCAAACTGGGTAGGATCTGATGTGTGCAGCTACACTGGGGTCTACTGTGCACCCGCACTGGACAACCCTAAGATCCGCACCGTTGCTGGCATTGATCTGAACCATGCGGATATTGCTGGCTACTTACCGGAAGAGCTTGGTCTCTTGGTGGATCTTGCCCTCTTCCACATTAACTCAAACAGGTTCTGTGGCACATTACCGCACCGCTTCGATAAGCTCAAGCTCTTGTTCGAATTGGATCTCAGTAACAACCGCTTCGCCGGCAAGTTCCCTGCTGTGGTACTGAGACTCCCAACCCTCAAGTTCTTGGATCTGAGGTTCAACGAGTTCGAAGGTGGGGTCCCCAGAGAGCTCTTTGACAAAGATCTTGACGCCATTTTCATCAATCACAACAGGTTCGTCTTTGAAATTCCTGATAACTTAGGAAACTCGCCGGTTTCCGTTATTGTGTTGGCCAACAACAGGTTCCATGGTTGCATCCCTGCAAGCATTGGGAACATGTCGAACCTCAACGAGATCATTCTCATGAACAATGAGCTCAGAGCGTGCTTGCCTTCCGAGATTGGCTTGTTGAAGAACCTCACAGTCTTTGATATCAGCTTCAACCAGCTCTTGGGACCATTGCCGGACGCCATTGGAGGAGCTGTGAGCTTGGAGCAGTTAGACGTAGCGCACAACTTGCTCTCTGGGAACATTCCGGCCAGTATTTGCATGCTGCCACATCTTCAGAACTTCACTTATTCTTATAACTTCTTCACAGGGGAGCCGCCGGCGTGCCTGAGGCTGGCATCGTTTGATGACCGGACGAACTGCTTGCCGGGAAGGCCGTTGCAGAGATCCGCGGCCCAATGTAGGTCGTTCTTGTCTAAACCTGTGGACTGTAACTCGTTTGGATGCAAGCCATTTGTTCCTTCCCCTTCACATCCTTCGCCTCCTTCTTCACCTTCTTCACCTTCACCCTCACCCTCTTCACCGCCTTCTATTCCTTCACCTTCTCTGCCTTCTCCCTCTTCGCCACCGTCTACCCCTTCGCCTTCTCCCCCCAATGCACCTGGACAAGCTCCTCCTCCATCAACTCCTACTCCCATACCTTCTCCACCTAGAAGCGAACCTTCCCCAATTTATAGACCACCCTCTCCTCCCTCCACACCACCCTCTTTCCCTCCTATTAATACCCCGCCATCACCACCCTCTTTCCCTCCTATTAATACCCCGCCATCACCACCATCAACATCTCCACCTTACACTCCACATTCTCCTCCTCCGCCACCGCCTCTTTACTCTCCTCCATCGCCCCCGCCATCACCAATCTATACACCACCTTCTCCCACGCAGCCAGCACCTCCATCTGAGCCTTCACCTACCCCAACCCCAACGCCACCATACTGTGTCCGGTCGCCACCGCCTCCACCTCCGCCGCCAAATTCTCCATCAATACCGGCTCCTGAATTATCCCCGCCCCCACCTTCGCCTTATCATTATACCTCGCCGCCACCTCCCACTCACTCACCTCCGCCACCCACATATAACCAATCACCGCCACCTCCACCACCCTGCATAGAACCTCCTCCACCGCCACCACCTTCTCCCACACCTTATCTCCCACCACCATCCCCATCACCTCCACCTCCACCGGTTCAACATAATTCCCCGCGACCACATCATCCACCGGTCCACTATAGTTCACCACCACCGCCACCGGCACAATATAGTTCACCACCACCGCCACCGGCACAATATAGTTCTCCACCACCCCCTGTCCATTACAGTTCACCACCACCACCAACCCCTGTTCATTATAGTTCTCCGCCGCCACCAGCATCATCACCACCCTGCGAAGAAACTCCACCATCCCCGACCCCTTCCCCACCACCATCCCCTGTATATGAAGGGCCATTGCCACCTGTCGTCGGAGTCCCGTACTCTTCGCCTCCACCACCACCTTTCTATTAA 2259 0.5343 MKKENQNVSVVAVLTALLFAGTLSSVCASHSKQTSFSGELSHVETMYIKQRQLLYYRDEFGDRGENVTVDPSLVFENQRIRNAYIALQAWKQAIVSDPLNFTANWVGSDVCSYTGVYCAPALDNPKIRTVAGIDLNHADIAGYLPEELGLLVDLALFHINSNRFCGTLPHRFDKLKLLFELDLSNNRFAGKFPAVVLRLPTLKFLDLRFNEFEGGVPRELFDKDLDAIFINHNRFVFEIPDNLGNSPVSVIVLANNRFHGCIPASIGNMSNLNEIILMNNELRACLPSEIGLLKNLTVFDISFNQLLGPLPDAIGGAVSLEQLDVAHNLLSGNIPASICMLPHLQNFTYSYNFFTGEPPACLRLASFDDRTNCLPGRPLQRSAAQCRSFLSKPVDCNSFGCKPFVPSPSHPSPPSSPSSPSPSPSSPPSIPSPSLPSPSSPPSTPSPSPPNAPGQAPPPSTPTPIPSPPRSEPSPIYRPPSPPSTPPSFPPINTPPSPPSFPPINTPPSPPSTSPPYTPHSPPPPPPLYSPPSPPPSPIYTPPSPTQPAPPSEPSPTPTPTPPYCVRSPPPPPPPPNSPSIPAPELSPPPPSPYHYTSPPPPTHSPPPPTYNQSPPPPPPCIEPPPPPPPSPTPYLPPPSPSPPPPPVQHNSPRPHHPPVHYSSPPPPPAQYSSPPPPPAQYSSPPPPVHYSSPPPPTPVHYSSPPPPASSPPCEETPPSPTPSPPPSPVYEGPLPPVVGVPYSSPPPPPFY* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0999 752 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 11 448 - -
Amo03g0999 752 MobiDBLite consensus disorder prediction 407 752 - -
Amo03g0999 752 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 448 - -
Amo03g0999 752 PRINTS Proline rich extensin signature 437 454 - -
Amo03g0999 752 PRINTS Proline rich extensin signature 399 420 - -
Amo03g0999 752 PRINTS Proline rich extensin signature 420 436 - -
Amo03g0999 752 PRINTS Proline rich extensin signature 462 487 - -
Amo03g0999 752 Gene3D Ribonuclease Inhibitor 249 389 IPR032675 -
Amo03g0999 752 Gene3D Ribonuclease Inhibitor 83 248 IPR032675 -
Amo03g0999 752 Pfam Leucine rich repeat N-terminal domain 86 118 IPR013210 -
Amo03g0999 752 SUPERFAMILY L domain-like 83 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0999 Amo-Chr3 21436905 21439585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0999 2 401 Trihelix Transcription Factor Family AT4G18670 73.815 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0999 - - gmx:100814585 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2448 13 43226647 43229827 Amo03g0999 03 21436905 21439585 hybridization