Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0971 ATGCCTTCTCTGTCTATCTTCCCGTCACTGCCATCGCTTCAAAACCCTAACTTGGAGCATGCCCACCTCTTCAAATCCATTGGAACCCTAAATTTCAGTTTAACTTCACGAGCAGAGTGTCCCTGCCACTTCTCGCACCACTTCAAAGCCACTCTCTCTCTTCTCTCTAGGGTACAGAACCATAGAATCCCGTCCCGGAGGATACACTGCAAAGTCTTGAAGGATCCTGGGGAAGAGGTTAAGGTGGTTTTGGACTCCGACGGTGGAGATGGCGGCGGCGGCGACGACGATGGCGATGGTGGGGATAAGAGAGAGGTTAAGAAGAAAGAAGGGTCTTCGGGGCCCTTGCCAGAATGGTTGAATTTCAATTCCGATGACGCAAAGACGGTGTTCGCGGCTCTGGCTATATCGCTTGCGTTTCGTGCGTTCGTGGCTGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACCTTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCATACTACTTTAGAAAGCCATGTGCGAATGACATAGTGATATTCAAAAGTCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAAACGGATTGTTGCAAAGGGAGGTGATATTGTGGAGGTTCGCAAAGGTCGTCTCATAGTTAACGGGGTTGAGAGGAGTGAAAAGTTCATCCTTGAACCACCTTCTTATGAGATGAAGCCCACGCGTGTTCCAGAAAACTACGTCTTTGTGATGGGGGACAACCGCAATAATAGCTATGATTCCCATGTGTGGGGTCCGTTGCCAGCCAAGAATATCATCGGAAGATCAGTGTTCCGATACTGGCCTCCAAATAGAATAGCCGGCACTGTTTCGGAGGATACTTGTCCCCTTGAAACCAAGCAGGACACAACTACTCTAGTTTCTTCTCAATGA 942 0.4788 MPSLSIFPSLPSLQNPNLEHAHLFKSIGTLNFSLTSRAECPCHFSHHFKATLSLLSRVQNHRIPSRRIHCKVLKDPGEEVKVVLDSDGGDGGGGDDDGDGGDKREVKKKEGSSGPLPEWLNFNSDDAKTVFAALAISLAFRAFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRIVAKGGDIVEVRKGRLIVNGVERSEKFILEPPSYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSEDTCPLETKQDTTTLVSSQ* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0971 313 Pfam Signal peptidase, peptidase S26 127 284 IPR019533 GO:0004252|GO:0006465
Amo03g0971 313 MobiDBLite consensus disorder prediction 83 113 - -
Amo03g0971 313 MobiDBLite consensus disorder prediction 96 112 - -
Amo03g0971 313 ProSitePatterns Signal peptidases I serine active site. 152 159 IPR019756 GO:0004252|GO:0016021
Amo03g0971 313 TIGRFAM sigpep_I_bact: signal peptidase I 128 286 IPR000223 GO:0006508|GO:0008236|GO:0016020
Amo03g0971 313 ProSitePatterns Signal peptidases I signature 3. 251 264 IPR019758 GO:0004252|GO:0016021
Amo03g0971 313 Gene3D Umud Fragment, subunit A 140 298 - -
Amo03g0971 313 PRINTS Bacterial leader peptidase 1 (S26A) family signature 143 159 IPR000223 GO:0006508|GO:0008236|GO:0016020
Amo03g0971 313 PRINTS Bacterial leader peptidase 1 (S26A) family signature 202 214 IPR000223 GO:0006508|GO:0008236|GO:0016020
Amo03g0971 313 PRINTS Bacterial leader peptidase 1 (S26A) family signature 246 265 IPR000223 GO:0006508|GO:0008236|GO:0016020
Amo03g0971 313 SUPERFAMILY LexA/Signal peptidase 141 290 IPR036286 -
Amo03g0971 313 CDD S26_SPase_I 146 278 IPR019533 GO:0004252|GO:0006465
Amo03g0971 313 PANTHER SIGNAL PEPTIDASE I 106 295 IPR000223 GO:0006508|GO:0008236|GO:0016020
Amo03g0971 313 ProSitePatterns Signal peptidases I lysine active site. 204 216 IPR019757 GO:0008236|GO:0016021
Amo03g0971 313 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 106 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0971 Amo-Chr3 20870539 20873159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0971 155 285 MADS-box Gene Family AT1G29960 30.827 1.53e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0971 K03100 - gmx:100815810 405.601