Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0968 ATGACCACCACAACCACCACCACTTCCTCGTCTCATATTCTCCGCCACACCTCCGACTTCATTTCCGGCGTCCTTTCTCAATCGGAGCTCCGGCGACATCTCGCCGCGACCCTCCACCGCGAGACCACATCACTCTGCAGCCAAACAACCCTCAGACAGCTCAGCCTCGCCTCCGACACCATTGAAAACGCCATCTCCTCCTCCAGCACCTCCATCCGAACCTCTTCCCTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTCTCCAAACTCCCCCTCTCCTCCTTCCTCCTCTCTCTCCTCCTATTCCTCTGGAACCGCCACGTGGATTCCGCCGTACTCCTCCTCCAAATCTTCCACTCCAATCCATCCCTGGTCAGATCCGAAATCGCTCCGGTTCTCTACGATCACCTCTTCTCCCTCCACCTGCTCCCTGTTTTCCGGTGGTTCGATGAGCACAGAACGCGGATTTTGTCCGAATCGAGCAGTGATGCGAGTGATTATTCAATTACGGAGGGGTCAGTGGTGCTGCCGTGCACCAAATTGTTGTCGAGGATGAGTGAGGATCAGGCTTCGAAGCTGAGGGAGTTGGAGAGAGAGTACCAGGAGGCTATCGACCAAAATTGCAGGGTTGTTGCTGTGTATTTCAAGGAGGTTTTGACCAGTAAAAGCAGTGAAGCGTCGATTAGTCCACCGCTGTTGACTCTGAAGAGCACGGAAGATGTTGACGGAGGGAAGAACAAAGAGGAGATTCAAGAATCCCAAATGTCTGTGTTGGAGAATGGACGGTATAATCCAATATGGTCCGAAAGGGAGACATCTATTGAATTCTTGAGCAGCACCTCCAGCAGCAAATCTTCACATATAAATTATTATCCTCAAAGAGTCTCTCCCAGAATCCTCAAACGCCAAAAATCTTCGAAAGATTCAGCACCAGTCTATATGAAATCAACAAGTGAAAATAGACCTTCTTTGGATGGGAATCTGTCTTCTTCTTCGGATTCCGAAGCAGAAAGTGAGGATGACGACAAAAATGTGGCATTGTTGGAGCCTCGACAAAGCCAGTCCCATGAACAAATGCAACCTAACTTGAAAGAATTCAGAGGCTCCCCAGAGTATCATATGGCAGAGTATGATAATCCGCCGCCTGGAACTGCAAAAAATATGCCTCCTAAGGACTTTGTCTGTCCGATAACTAGTAACATATTTGATGATCCTGTGACTCTTGAGACAGGACAAACATACGAACGTAAAGCTATCGAGGAATGGTTCAAAACTGGCAACTCAACTTGTCCAATCACTCGCCAGAAGCTGCAAAACACGCAGTTACCTAAGACAAACTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACACAACCCTAATTCAGTTCCACCGCCATGTGAGAGTCCATATGAAGAAAGCAAGGCAGTAACGAAGACAATAAAGGTTTCAACTCTGCCTAAAGATGTCGTAAAACAAGCCACGGTGGATGGGATCATTAGTGAGTTGCGCCATGCAATCAATAATCTCTATATGTCAGATATTCTTGAAGAATCTGAAATGGCTGTGCTTCATATTGAGAAGCTTTGGAGAGAAGTGAATTTAGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTATGGAGATCCTTTTCAATTCTGTTCAGCCCCGGGTGCTACGAGCAGCAGTGTTCCTTCTGGCCGAAACCGGTTCTAGAGACCACTCTGTTATTCAGACGCTTACGCGTGTGGACACTGACGTAGAATGTATCATGGCACTTTTCAAGAAAGGGTTGACAGAAGCTGTTGTGCTGCTGTATCTGCTAAAACCTTCCACTACAAGTCTTGCTGAGATGGCCACACCAGAATCTCTCCTAGCAGCATTCAATAAGGAAGAGGAAAACTTGGTTCCAATGTGTCTGAAGCCCAAAACAGCTGCCTTGCTTTTATTCGCACAGGTTATTGGAAGTAGTGAAGAAAGAATTGCGTTGTCAGCTGCCAAGTGTGTTTTCTCTGAAAAAGCAATCGGAAATATTGTCGCCAGTTTAGAAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATGCAAGAGGATGGGACTTGCCGGAACACCATTGCTGAAAAGGCAGACTTGTCTCCTATTTTGGAAAGTTTCACTGGTGCAACTGATGTAGAGTGTTTAAAAATTGTCCAATTTTTCTCTGAATTAATAAAGTTAAATAGGAGGACATTGAATGAACAAATCCTCCGCTTTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACACTGCTCATTTGTCTGCAGACAGGCCTTCAAGACCAATGTCCTGTCATGGCCGGCCTTTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCAATAGATACTCTCATTTCATGCCTGAGAAACACAGATTTCCCTGCTGCTCAATTAGCAGCTGCTCATACAATCATGTCACTTCAAGGGAGGTTCGACTTCTCTGGAAAGTCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTGTTGACAGAAGTCCTGGATATCTTGAACAGGTGCTCCAGATCAACAGCTTCTACCCAGAAACTGAAATAACTCCTGAAGAAGAGAAAGCAGCGGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTCAGCCACGAGTTTGGTATAGTTTTCGAGGCTTTAGCAGATGGCATAAATAGCCGAAATCCAGAACTACGGTCAGCATGCTTTATATCAGCTACGTGGCTCGTATACATGTTGACCATTCTACCGGACACAGGGGTACAAGGAGCAGCGCGTGTCTGCTTGCTGAAACAGTTCATAACAAAACTAAATTCTGCTAAGGACATTCATGATAGAGTCCTTTCTATGATTGCTCTAAATAGTTTTCTCCATTTCCCTGATGGCTTTCACGATCTAACTTCCTACACTAAGGATATCTTAAAAGGTTTGAGAGAGCTTAAGAGAATCTCTCCATTGACATCTGAAATTCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAAGTGACATATGGATACATAAAGAGCTGATTCGAGTAGATTGCAGTGAGAATGGGGAAGTGCCATCTCTCATTTGTTTCAAGAATAAATTATTTTCGGGCCACTCTGATGGAACTATTAAGGTTTGGATGGTAAAGGATACTTCATTCCATCTCTTGCAAGAGATCCAAGAACATCTTAAGCCTGTAACAAGTTTGGTGATTTCAGAATCTGGTGACAGACTATACAGCGGTTCACTTGATCGAACTGCAAAGGTTTGGTCTATTGGAAAGGCAGCAATTCATTGTGTACAAGTTCATGATATGAAGGAGCAGATTCATAATTTAATTGTAACTGACAGCATATCTTGTTTCACTGCACAGGGCGCTGGTGTCAAGGTTCAATCATGGAATGGAGAATCAAAATTGTTAAATTCTAATAAATACGTTAAGTGCTTGGCTCATGTTCATGGGCGATTATACTGCGGCTGCCACGATAGCAGTGTTCAGGAGATAAATCTGGACACCGGAAACGTCAGTACTATTCAAAGTGGTTCTAAAAAACTACTTGGCAAAGCCTATCCTATTCATGCACTGCAACTTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTAGATGGATCTGTTATAAAGATGTGGGACAATTCTAGTTATAGATTGGTGGGATCTCTGCAAACCGGATTGGAAGTGCGGGCAATGGCTGTGAGCTCAGAATTAATTTACTTGGGGGGCAAGGGGGTAGCTGTGGAAATCTGGGATAAGACGAAACACAACAAACTTGACACATTACAAACGGCCACAAACAGTAGGGTTCTTTGCATGTCTCTAGACAGGAATGAAGAAATTTTGGTAATTGGAACTTCTGATGGCCAAATTCAG 3972 0.4439 MTTTTTTTSSSHILRHTSDFISGVLSQSELRRHLAATLHRETTSLCSQTTLRQLSLASDTIENAISSSSTSIRTSSLTLAEKLLLPLSKLPLSSFLLSLLLFLWNRHVDSAVLLLQIFHSNPSLVRSEIAPVLYDHLFSLHLLPVFRWFDEHRTRILSESSSDASDYSITEGSVVLPCTKLLSRMSEDQASKLRELEREYQEAIDQNCRVVAVYFKEVLTSKSSEASISPPLLTLKSTEDVDGGKNKEEIQESQMSVLENGRYNPIWSERETSIEFLSSTSSSKSSHINYYPQRVSPRILKRQKSSKDSAPVYMKSTSENRPSLDGNLSSSSDSEAESEDDDKNVALLEPRQSQSHEQMQPNLKEFRGSPEYHMAEYDNPPPGTAKNMPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFKTGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEHNPNSVPPPCESPYEESKAVTKTIKVSTLPKDVVKQATVDGIISELRHAINNLYMSDILEESEMAVLHIEKLWREVNLGVDIHSMLSKPPIINGFMEILFNSVQPRVLRAAVFLLAETGSRDHSVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLKPSTTSLAEMATPESLLAAFNKEEENLVPMCLKPKTAALLLFAQVIGSSEERIALSAAKCVFSEKAIGNIVASLEAEWAEERIAAVEILLRCMQEDGTCRNTIAEKADLSPILESFTGATDVECLKIVQFFSELIKLNRRTLNEQILRFIKEEGPFSTMHTLLICLQTGLQDQCPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPAAQLAAAHTIMSLQGRFDFSGKSLTREVLLKRAGVDRSPGYLEQVLQINSFYPETEITPEEEKAADDWERKIASVLVSHEFGIVFEALADGINSRNPELRSACFISATWLVYMLTILPDTGVQGAARVCLLKQFITKLNSAKDIHDRVLSMIALNSFLHFPDGFHDLTSYTKDILKGLRELKRISPLTSEILKVLVEENESKSDIWIHKELIRVDCSENGEVPSLICFKNKLFSGHSDGTIKVWMVKDTSFHLLQEIQEHLKPVTSLVISESGDRLYSGSLDRTAKVWSIGKAAIHCVQVHDMKEQIHNLIVTDSISCFTAQGAGVKVQSWNGESKLLNSNKYVKCLAHVHGRLYCGCHDSSVQEINLDTGNVSTIQSGSKKLLGKAYPIHALQLHGELIYAAGSSLDGSVIKMWDNSSYRLVGSLQTGLEVRAMAVSSELIYLGGKGVAVEIWDKTKHNKLDTLQTATNSRVLCMSLDRNEEILVIGTSDGQIQ 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0968 1324 MobiDBLite consensus disorder prediction 283 342 - -
Amo03g0968 1324 SUPERFAMILY ARM repeat 26 1032 IPR016024 -
Amo03g0968 1324 SUPERFAMILY WD40 repeat-like 1053 1323 IPR036322 GO:0005515
Amo03g0968 1324 Coils Coil 186 206 - -
Amo03g0968 1324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 465 IPR013083 -
Amo03g0968 1324 SMART Ubox_2 392 456 IPR003613 GO:0004842|GO:0016567
Amo03g0968 1324 Gene3D - 1122 1324 IPR015943 GO:0005515
Amo03g0968 1324 Pfam WD domain, G-beta repeat 1083 1118 IPR001680 GO:0005515
Amo03g0968 1324 SMART WD40_4 1037 1074 IPR001680 GO:0005515
Amo03g0968 1324 SMART WD40_4 1199 1245 IPR001680 GO:0005515
Amo03g0968 1324 SMART WD40_4 1079 1118 IPR001680 GO:0005515
Amo03g0968 1324 ProSiteProfiles Trp-Asp (WD) repeats profile. 1086 1119 IPR001680 GO:0005515
Amo03g0968 1324 CDD RING-Ubox_PUB 393 435 IPR045210 -
Amo03g0968 1324 Pfam U-box domain 390 460 IPR003613 GO:0004842|GO:0016567
Amo03g0968 1324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1086 1119 - -
Amo03g0968 1324 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1324 - -
Amo03g0968 1324 SUPERFAMILY RING/U-box 389 465 - -
Amo03g0968 1324 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1324 - -
Amo03g0968 1324 Gene3D - 1026 1121 IPR015943 GO:0005515
Amo03g0968 1324 ProSiteProfiles U-box domain profile. 388 463 IPR003613 GO:0004842|GO:0016567
Amo03g0968 1324 MobiDBLite consensus disorder prediction 309 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0968 Amo-Chr3 20814650 20820841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0968 390 467 U-box Gene Family AT3G46510 51.282 1.83e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0968 - - gmx:100808867 1793.48