Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0953 ATGTCTGCAGAAAAGGGGTATGTAGGGTTGGGAGAGGTTGGTGAAATGGAAGAAAGCATTGGGTTGAACCTGAAAGCAACTGAGTTGAGGCTTGGGTTGCCAGGGTCAGAGTCACCGGTGAAGAGTACTAGTTTGGGGGCAAAGAGGGGTTTCTCGGACGCCATTGATGGCAAGTGGGTTCTTTCTGGGAATGGAAAAGCTGGATCTGACTTGGCTTTGGGCAAAGATGCTTCCTTGTTCTCTCCTCCCTCTGACAATACCAACAATGACCCTCTTCCACTTCCACAACCTTCAAAGCCTATTCCTGCTCCTGCTGCAAAGGCACAAGTTGTTGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCAACTCAGCCTCCTCAAAAGAATGAAGCTGATGCAGAACCCAAGCCTGGTTGCCTTTATGTCAAAGTCAGCATGGATGGCGCCCCATACTTGAGGAAAATGGATCTCAACAATTATGCTTCCTATAGGGACCTCTCTTCAGCACTCGAAAAGATGTTTAGTTGTTTTACTCTCGGTCAATGCGGCTCTCATGGGGTTTCTAGCCGAGATAATTCAAGCGAAAGCAAATTGAGGGATCTCCTCCACGGCTCGGAATACGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCTTGGGAGATGTTCACTGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCCGAAGCAATTGGGTTAGCACCTAGAGCCATGGAAAAGTGCAGAAGTCGCAATTAG 789 0.4791 MSAEKGYVGLGEVGEMEESIGLNLKATELRLGLPGSESPVKSTSLGAKRGFSDAIDGKWVLSGNGKAGSDLALGKDASLFSPPSDNTNNDPLPLPQPSKPIPAPAAKAQVVGWPPIRSFRKNSMATQPPQKNEADAEPKPGCLYVKVSMDGAPYLRKMDLNNYASYRDLSSALEKMFSCFTLGQCGSHGVSSRDNSSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCRSRN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0953 262 PANTHER AUXIN-INDUCED PROTEIN 12 87 - -
Amo03g0953 262 PANTHER AUXIN-INDUCED PROTEIN 100 255 - -
Amo03g0953 262 SUPERFAMILY CAD & PB1 domains 138 243 - -
Amo03g0953 262 Pfam AUX/IAA family 42 253 IPR033389 -
Amo03g0953 262 Gene3D - 137 255 - -
Amo03g0953 262 ProSiteProfiles PB1 domain profile. 142 244 IPR000270 GO:0005515
Amo03g0953 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 100 255 IPR003311 GO:0005634|GO:0006355
Amo03g0953 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 87 IPR003311 GO:0005634|GO:0006355
Amo03g0953 262 MobiDBLite consensus disorder prediction 76 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0953 Amo-Chr3 20260666 20262939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0953 85 247 B3 DNA Binding Superfamily AT3G61830 29.878 2.53e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo03g0953 AUX_IAA 2.2e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0953 K14484 - gmx:100803754 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2410 13 42025072 42027269 Amo03g0953 03 20260666 20262939 hybridization