Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0949 ATGATGGATGTTGCTGAGCTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGGACTCTTTCTGCAATATATTGTAAAATATTGACAATATTTCCTTCTCTAGAAGCAGCTAAGCCTAGGAGCAAATCTGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCGATAACTGGCGACGCCGTACTTCAAAAATTTGAAAAGGCTAAGTCTGCACTTGTTGACAGTCTTAAACTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGGTTGAGAAAATTGTGGATGAACTTGCAAGTACGGTTTTTGCAATTGACCCCTYAGAAAAACAAGTTGGCGACGATTTAATTGCATTGCTTCAGCAGGGAAGGAAGCTTGACAACTCTAATGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGRAATTACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTCAAAAAACTCATTGAAAGGGCTCAGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTTAGAAGTGAATTCTCAGATGATAATGATTCTCAGGGCTCCCAACCCTGTTCACCTACCGTTAATGGATATGTTGAGGATGGTGTTCAGACTCAAGCGTTTGATAGAGTATTTTCAAAACTTAGTTCCATTAACTTAAAGCCGAATAATAGAAAATCAGGCCAGATGCCCCTTCCCCCTGAAGAGTTGAGGTGTCCGATATCTCTGCAACTCATGAGTGATCCTGTTATAATTGCTTCRGGTCAAACATACGAAAGGGCTTGTATAGAAAAATGGTTCAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTATTGACTCCTAATTACAATGTCAAGAATCTTGTGGCTAGTTGGTGYGCACAGAATGGAATTCCTATTCCTGAAGGCCCTCCYGAATCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACCGATTCCACAAATTCAAAATCTGTTAACAGTGTAAATTCTTGCAAGTTGAAAGGTGYGAAAGTGGTTCCAGTAGAAGAGAGCRGCATGTCAGAGCAAACYGGGGTAGCTGGAGCTGAAAGTGTGTCTACACAAGAGGACGATAATGAACAGTATCTTAGTTTTCTGAAAGTCTTAACAGAAGGGAACGACTTACAGGGGAAGTGTAAGGTTGTACAAAGGTTAAGGATGTTGCTAAGGGATGATGAGGACGCCAGGACATTTATGGGTGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTCCAATCAGCTTTGCRTGAAGGAAATGCRATGGATCAAGAAAATGGAGCTATGGCCCTGTTCAACCTTGCTGTGAACAATGACAGAAACAAGGAAATGATGATATCAGCCGGAGTCTTATCCTTGTTGGACGAAATGATCTAYAAACCTACTTGCTATGGWTGTGCAACTGCCCTWTATCTAAATCTCTCTTGCCTTGAAGAAGTCAAGCCTATGATTGGTTCRGGTCAGGCTGTCCCATTCCTAGTCAAGATTCTTAAATCCAGCTCTGATGTTCAATGCAAGCTAGATTCGCTCCACACACTCTATAATCTTTCCACCGTACCCACCAACATTCCATACCTCCTTTCATCTGGAATCATTGTTGGCTTGCAATCCCAGCTTGTAGGCCAGGGTGATAGTGTGTGGACGGAAAAATGCATAGCTGTATTGATAAATTTGGCGGTTTCTCAATTGGGTAGAGAGGAAATTGTGTCATCTCCAGGAATCATAAGCACATTGGCGTCAATACTCGACACTGGTGAGCTCCTAGAGCAAGAGCAAGCCGTCGCATGTCTCCTAATTTTGTGTAACCGAAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAGGGGTCATCCCTGCCTTGGTCTCAATATCGGTGAATGGGACGTCAAGAGGCAGAGAAAAATCTCAAAAGCTGTTGATGCTCTTCCGAGAGCAACGACAAGAAGAGCATTCCCCATCCAAGCCACAAGGCCGACCAGAAACCAGCAATTCATCTATGCCTAAGCCTGAGATGAAACCACTATGCAAGTCTACATCTAGGAGAAAGGTGGGGAAGGCTTTAAGCTTTCTGTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAG 2286 0.4208 MMDVAELEENLFAASDAKLHGEMCRTLSAIYCKILTIFPSLEAAKPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDAVLQKFEKAKSALVDSLKLVEDIVPQSIGCQVEKIVDELASTVFAIDPXEKQVGDDLIALLQQGRKLDNSNDSSELECFHQAATRLXITSSRAALTERRALKKLIERAQAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGYVEDGVQTQAFDRVFSKLSSINLKPNNRKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFSDGHNTCPKTQQKLPHLLLTPNYNVKNLVASWCAQNGIPIPEGPPESLDFNYWRLALSDTDSTNSKSVNSVNSCKLKGXKVVPVEESXMSEQTGVAGAESVSTQEDDNEQYLSFLKVLTEGNDLQGKCKVVQRLRMLLRDDEDARTFMGANGFVEALMQFLQSALXEGNAMDQENGAMALFNLAVNNDRNKEMMISAGVLSLLDEMIYKPTCYGCATALYLNLSCLEEVKPMIGSGQAVPFLVKILKSSSDVQCKLDSLHTLYNLSTVPTNIPYLLSSGIIVGLQSQLVGQGDSVWTEKCIAVLINLAVSQLGREEIVSSPGIISTLASILDTGELLEQEQAVACLLILCNRSKKCCEMVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQRQEEHSPSKPQGRPETSNSSMPKPEMKPLCKSTSRRKVGKALSFLWKSKSYSVYQC* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0949 761 SUPERFAMILY RING/U-box 276 352 - -
Amo03g0949 761 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
Amo03g0949 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Amo03g0949 761 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Amo03g0949 761 PANTHER U BOX DOMAIN-CONTAINING 2 749 - -
Amo03g0949 761 Gene3D - 424 601 IPR011989 -
Amo03g0949 761 MobiDBLite consensus disorder prediction 701 715 - -
Amo03g0949 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 509 IPR000225 GO:0005515
Amo03g0949 761 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 749 - -
Amo03g0949 761 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Amo03g0949 761 MobiDBLite consensus disorder prediction 701 739 - -
Amo03g0949 761 Coils Coil 176 196 - -
Amo03g0949 761 Gene3D - 602 700 IPR011989 -
Amo03g0949 761 SMART arm_5 452 496 IPR000225 GO:0005515
Amo03g0949 761 SMART arm_5 536 578 IPR000225 GO:0005515
Amo03g0949 761 SUPERFAMILY ARM repeat 421 705 IPR016024 -
Amo03g0949 761 CDD RING-Ubox_PUB 281 323 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0949 Amo-Chr3 20188598 20193325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0949 2 760 U-box Gene Family AT1G24330 65.419 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0949 - - adu:107478647 1300.03