Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0897 ATGGGTGAGGACCTACCAAGCCCAAACTCTTGTTATTCTTCTTCTTCGTCAGTTAGTCTGGATCCGGAAAAGCAGAAAAGTGCGGGAAAGAGGGGGAGGGAGAGGAGTAATAACAAGAATAATAATAAGCACCCGGTGTACAGAGGGGTGAGAATGAGAGCGTGGGGCAAGTGGGTCTCTGAAATCAGAGAGCCTCGTAAGAAGAATCGCATCTGGCTCGGCACCTTCGCCACCCCCGACATGGCCGCCCGCGCCCACGACGTCGCCGCCCTCGCCATCAAAGGCTCCTCCGCCATTCTCAACTTCCCACAGCTCGCCCCCCAACTCCCCCGCCCCCACTCTAACTGTCCCCGTGACGTCCAGGCCGCCGCCGCCAAAGCCGCCTCCATGGACTTTCTCTCTCCCTCATCATCATCATCATCATCGTCGTCGTCGTCACCATCATCATCAATATCGTCGTCCGAGGAGCCATCGACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCAGCACTAGGAACGAGTTTCGAATCGGCGGAGGCGAACAAGGAAATGGTGTTCTTGGAGCCAGTTGATGGGTGGCTGTATCCTCACCCATGGTGGTATCACAGCAGCAGCATTTATGAGGAGGAAGTGAGGGAAGATTGCGGTGTCTATTTTACCGGGGATCAGATTTCAATGCACACTCAGTCTAAGTCTCACCAGTACACCACTCTTGACCTTGATCCTCCTTCCTTGTGGCAATACTAA 750 0.5507 MGEDLPSPNSCYSSSSSVSLDPEKQKSAGKRGRERSNNKNNNKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPDMAARAHDVAALAIKGSSAILNFPQLAPQLPRPHSNCPRDVQAAAAKAASMDFLSPSSSSSSSSSSSPSSSISSSEEPSTPEELGEIVELPALGTSFESAEANKEMVFLEPVDGWLYPHPWWYHSSSIYEEEVREDCGVYFTGDQISMHTQSKSHQYTTLDLDPPSLWQY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0897 249 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Amo03g0897 249 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Amo03g0897 249 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Amo03g0897 249 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Amo03g0897 249 MobiDBLite consensus disorder prediction 1 48 - -
Amo03g0897 249 MobiDBLite consensus disorder prediction 134 159 - -
Amo03g0897 249 MobiDBLite consensus disorder prediction 7 23 - -
Amo03g0897 249 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Amo03g0897 249 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Amo03g0897 249 MobiDBLite consensus disorder prediction 134 162 - -
Amo03g0897 249 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Amo03g0897 249 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Amo03g0897 249 MobiDBLite consensus disorder prediction 24 41 - -
Amo03g0897 249 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 225 - -
Amo03g0897 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0897 Amo-Chr3 18737471 18738866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0897 5 217 AP2-EREBP Transcription Factor Family AT5G11590 54.751 2.67e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo03g0897 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0897 K09286 - csv:101219745 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g0897 03 18737471 18738866 Amo05g3832 05 104571565 104572811 PCT
Amo05g3832 05 104571565 104572811 Amo03g0897 03 18737471 18738866 PCT