Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0854 ATGAATAAGATGGATCTGATAGATGCGAAGCTGCAAGAAGAGCATCAATTGTGTGCATCATCGTGGAAACAGTGCCCCGCTTGTGGACATAAGTTTGAAGGCAGCAGCGGGAAGAAGGGGGAGTGGGAGTGGGTAGGTCTGCCAGCAGGAGTGAAGTTCGATCCAACAGACCAAGAACTGATAGAGCATCTAGAAGCAAAAGTAGAGGCAAAGAGATCGCACCCTTTGATCGATGAGTTCATTCCCACCATYGAAGGAGAAGATGGAATCTGTTACACCCATCCCGAGAAGCTYCCAGGTGTGACGAGGGATGGGTTGAGCAGACACTTCTTTCACAGGCCATCAAGGGCGTACACCACTGGAACACGGAAGAGAAGAAAGATTCTTCAAAACGATGAGGCGGAGGCCGAGAGAGGAGAGACACGGTGGCACAAGACCGGTAAGACAAGGGCCGTTATGCTCAAGGGAAAGCAGAAGGGGTGCAAGAAGATTCTGGTGYTGTACACCAACTTCGGCAAGAACAGGAAGCCCCAGAAGACCAACTGGGTCATGCATCAGTACCACCTCGGACTCCATGAAGAGGAGAAAGACGGGGAGCTCGTCGTCTCTAAGATTTTCTACCAAACTCAGCCCAGGCAATGCAGTTGGTCTTCTTCTTCTTCTTCTTCTTCAATTACTGCTGCTGCTGCACCCTCTGTCAAAACTAATAATGACACGTGTCCCGTTCTTGGATTCCCTCCTATGGAACATTTCAGCAGCTTCATCCCTCTCAGAAAACCCCTCCATAATGAGGAAGTTGGAATAGGAGGGGAAACTTGCACACCAGCGTCACATATTCCTTCATCAAATCCTCTTGGAGTCTTCCATCACAACACTTCCATCATCCTTGACGACCTTATCTCCGCTAGATTCATGACTCCTCCTCCTCCTCCTCATTTCCACCAGCATGATAATAAAGTAGTAGGAGGAACCTCTGCTTCTGGTTTAGAGGAACTCATCATGGGCTGCACTTCAACTTCAACCACTCATAATATCACCAAAGAGGCATCAATGACAAACACAAACCCACAAGAAGCTGAGTGGTTGAAGTACTCTTCTTATTGGGCTGACCCTCAGCCTCAGCCTCAGCCTCATCTTCATGGGTAA 1146 0.486 MNKMDLIDAKLQEEHQLCASSWKQCPACGHKFEGSSGKKGEWEWVGLPAGVKFDPTDQELIEHLEAKVEAKRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSRAYTTGTRKRRKILQNDEAEAERGETRWHKTGKTRAVMLKGKQKGCKKILVLYTNFGKNRKPQKTNWVMHQYHLGLHEEEKDGELVVSKIFYQTQPRQCSWSSSSSSSSITAAAAPSVKTNNDTCPVLGFPPMEHFSSFIPLRKPLHNEEVGIGGETCTPASHIPSSNPLGVFHHNTSIILDDLISARFMTPPPPPHFHQHDNKVVGGTSASGLEELIMGCTSTSTTHNITKEASMTNTNPQEAEWLKYSSYWADPQPQPQPHLHG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0854 381 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 224 - -
Amo03g0854 381 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 224 IPR044799 GO:0003700
Amo03g0854 381 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Amo03g0854 381 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Amo03g0854 381 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Amo03g0854 381 SUPERFAMILY NAC domain 42 208 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0854 Amo-Chr3 17470428 17473048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0854 2 376 NAC Transcription Factor Family AT5G56620 50.355 1.23e-121 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo03g0854 NAM 8.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0854 - - gmx:100795246 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g0854 03 17470428 17473048 Amo05g3713 05 102080840 102086284 PCT