LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo03g0848	ATGAAGAGTCATAATTAYCTACTTATATTATTGATTATTGTTGTGATTGTAGTTTTTAATTGTTGTTTCAACATTCGATGTGATTGGAGAGACGAATCTTAYGAAGTCTACGTGAACGGGATTGTTGGTCAATTTCGAGAGAATGTGCCTAACGCTTCCATTATGGTATGCAATTTTCGCGAGGAAAACACTAAAAGCAAGTTGGATAACATATTCTCTAAGCATGAAATTAATCTCATGAACTATCCTTGCCACCACCATGGTTTCCCTATGCTCAAATTGGAGGCCATACATCATTTTCTAAATTCATGTGATAGTTGGCTCTCACATGGGCAAAATAAGGTGTTGTTAATGCATTGYGAGCRTGGTGGCTTGCCAGTTTTGGCCTTCATGTTGGCTGCATTGTTGATTTTCTTGAAACAATATWAAGGGGAGCAGAGGACGTTAGATATGGTTTACAAGCAGGTACGTCGTGATTTTTTACAATCCTTAACAATGGTGAATCCAATCCCTTCCCAATTGCGGTATTTACGATATGTTTCCAAGACCAATATGGCCTTTGATTGGCCTTCATTGGATAGGACACTTAGGTTGGACTACATCATTATGACATTTCTTCCAAACTTTAATGGGAATGGTGGATGTTTTCCAATATTTAGAATTTATGGCGAAGATCCCTTTCTTGTTGACAAGAATCCTAAGATCCTATACTCAACACCAAAGAGTCCCAAAAACATTCAAGCTTATAAACAGGGAGAGCGTGATGATAAAATCAAAGTCAATATCAACTGTCGGATTCAAGGTGATGTGCTGATTGAAAGTGTTAATTTGGATAGTGACTTGGAAAATGAACAGATGATATTCCAAACGATGATTAACACAAATTTCATTAGATCTAATTTGTTGATGCTTAATCGGGAGAAAATTGATATTTTGTGGGATGCAAAAGATCGCTTCCCAAGGGATTTCAAACTAGAGATAACTTTCACAGAGAAAGATGTTGCTCCAAAGACTGAGTCATCCTCTAGCTTTGAGGAAAGGGAGGGATTACCAATTGAAGAATTTACCAAAGCCAAAGAGATTTTTAACCATGGAGATTGGACGAGTCCTAATGATGAAGATCACACAGTAAATGATACTAACACAATCAATGATACCTCAATTTCACCACAAACACCTCCATTGAGGTCTCCCAGAAGTGATAAAAATGTTGATGAGTCTCTTCCTCATCAGTTGCATTCAAAGTCACAAAATCCTAATACTAATGTAACAAGACCTGATTTGTTGCTTTCACAGCAAAAAACCCAACCCCCACCGGATCAAATTAGAGCTCCTCTATCCCCACCAACTCCTCCAAAGAATGAAACATTTGTAAGAGTTGGATCCCCTCTTTCTCCTCCAACTCCAAATGCTACAATGCCTACTACCACCCCACCTCCGCCGCCAACGCCACCCCCGGTTGGAGACCATTACGCTAACAATGGTTTTCCAACTTCATTGTGTATTGGTCGTGGAAAGAATGACACTGGCAATCACACGATGCATTCAATGAGTAACACCAAAAAGTTAAAAACATTGCATTGGTTAAAATTATCTCGAGCAGTGAAAGGAAGTTTGTGGGCTGAGGCACAAAAATCTGGTGAAGCTTCCAAGACACCAGATATTGATATGTCTGAGCTTGAAAATCTCTTCTCAGCAACAACACCAAGTTTAGGCCAAGCAAAGAAGTCAAAGATCCAAAACTTAGTTACGCCAAAATCTGATAAAGTGCAACTGATTGAACATACACGAGCATATAATTGTGAAATCCTTCTTTCAAAAGTGAAAGTCCCGTTGAAGGATTTAATGAGCTCAGTTTTAGCATTAGAAGAGACAGCATTAGATATTGATCAGGTTGAAAACCTGATAAAGTTTTGTCCAACAAAGGAAGAGAAGCAAGTACTTAAGGATTATGACGGAGACAAGGAAAAATTGGGGAGATGTGAACAGTTCTTCTTAGAGTTGATGAAAGTTCCAAGGGTAGAATCCAAGCTGAGAGTTTTTTCATTCAAGATTGAATTCAATACTCAGGCTTCTGACCTTAGAAATAACATCAATATTGTTAATGATGCTGCAGAAGAGGCATGA	2127	0.3836	MKSHNYLLILLIIVVIVVFNCCFNIRCDWRDESYEVYVNGIVGQFRENVPNASIMVCNFREENTKSKLDNIFSKHEINLMNYPCHHHGFPMLKLEAIHHFLNSCDSWLSHGQNKVLLMHCEXGGLPVLAFMLAALLIFLKQYXGEQRTLDMVYKQVRRDFLQSLTMVNPIPSQLRYLRYVSKTNMAFDWPSLDRTLRLDYIIMTFLPNFNGNGGCFPIFRIYGEDPFLVDKNPKILYSTPKSPKNIQAYKQGERDDKIKVNINCRIQGDVLIESVNLDSDLENEQMIFQTMINTNFIRSNLLMLNREKIDILWDAKDRFPRDFKLEITFTEKDVAPKTESSSSFEEREGLPIEEFTKAKEIFNHGDWTSPNDEDHTVNDTNTINDTSISPQTPPLRSPRSDKNVDESLPHQLHSKSQNPNTNVTRPDLLLSQQKTQPPPDQIRAPLSPPTPPKNETFVRVGSPLSPPTPNATMPTTTPPPPPTPPPVGDHYANNGFPTSLCIGRGKNDTGNHTMHSMSNTKKLKTLHWLKLSRAVKGSLWAEAQKSGEASKTPDIDMSELENLFSATTPSLGQAKKSKIQNLVTPKSDKVQLIEHTRAYNCEILLSKVKVPLKDLMSSVLALEETALDIDQVENLIKFCPTKEEKQVLKDYDGDKEKLGRCEQFFLELMKVPRVESKLRVFSFKIEFNTQASDLRNNINIVNDAAEEA*	709

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo03g0848	708	Pfam	C2 domain of PTEN tumour-suppressor protein	194	331	IPR014020	-
	Amo03g0848	708	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	195	331	IPR035892	-
	Amo03g0848	708	MobiDBLite	consensus disorder prediction	374	398	-	-
	Amo03g0848	708	Gene3D	-	196	330	-	-
	Amo03g0848	708	Gene3D	Formin, FH2 domain	511	708	IPR042201	-
	Amo03g0848	708	ProSiteProfiles	C2 tensin-type domain profile.	193	332	IPR014020	-
	Amo03g0848	708	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	55	181	IPR029021	-
	Amo03g0848	708	SMART	PTEN_C2_2	191	331	IPR014020	-
	Amo03g0848	708	Pfam	Formin Homology 2 Domain	518	707	IPR015425	-
	Amo03g0848	708	MobiDBLite	consensus disorder prediction	361	516	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo03g0848	Amo-Chr3	17370718	17381961	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo03g0848	459	707	Protein tyrosine phosphatase (PTP) family	AT5G58160	59.200	4.58e-80	276

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo03g0848	-		-	ahf:112775940	1358.2

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