Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0834 ATGTTCCAACCAAACATGACTGAAGCTGTTGGTGGCCTTCACTATCATCACCAGTATCATCCTTTTGATATGGCTCAGAACACAACAACATCGGAGAGTGATGTACCGAGAATTCGAGAGGACGAGTTATTTGACAGCGCCACCAAGTCCGGCAGCGAGAACCTTGAGGTTGAAGGTGGTGGAGGAAGTGGTGGTGGTGGTGAAGGTGGTTCTGCTGGGGAAGACCAAAACCCTCGCCCTAATAAGAAGAAACGCTATCACCGCCATACCCAACACCAGATCCAAGAGATGGAAGCTTTCTTTAAGGAGTGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAGTTAGGGTTAGAGCCATTGCAAGTGAAGTTCTGGTTCCAGAACAAACGCACTCAAGTGAAGACTCAAACTGAAAGGAGCGAGAACTCACAGCTAAGAGCGGAAAATGAGAAGCTTAGAGCAGATAACATGAGGTATAGGGAAGCACTAAGCAATGCATCGTGCCCTAGTTGTGGTGGCCCAACCGCCATAGGGGAAATGTCATTCGATGAACATCACCTCAGGCTTGAAAATGCACGTCTTAGGGAAGAGATTGATCGAATTTCAGCAATTGCAGCCAAGTACGTAGGCAAGCCTGTGGTGAACTATTCAAACCTCTCCCCTGCCCTCCCACCTCGCCCGCTAGAACTCGGCGTTAGCGGTGGCAGTGGCGGCTTTGGAGGTGGTAGTGACATGTACAGTGGTGGTGCCGGAGACTTCCTGAGGTCGATAAACGGGCCCTCGGAAGCCGACAAGCCACTGATAATTGAGCTGGCTGTTGCAGCCATGGAGGAGTTAGTTGGGATGGCACAAATGGGTGAGCCACTTTGGTTGACAATGACCTCCATTGACGGTGGCACTTCCACTGTGCTCAACGAGGATGAGTACGTTAGAACCTTCCCTCGTGGAATTGGCCCCAAACCTGCTGGGTTCAGATCCGAAGCTTCTAGAGAAACCGCTGTTGTTATCATGAACCATGTTAACCTCGTCGAAATTCTCATGGATGTGAACAATTGGTCGACAATGTTCTCTGGTATAGTCTCAAGAGCTATAACTATAGAAGTGCTATCAACAGGAGTGGCTGGGAACTACAATGGTGCTTTACAAGTGATGAGTGCAGAATTACAAGTACCTTCTCCACTTGTGCCAACTCGAGAGAGCTATTTTGTGAGATATTGTAAGCAGCATGTAGATGGGAGTTGGGCAGTGGTGGATGTGTCGTTGGATCATTTGCGCCCTGGTCTTACTCCAAGATCTAGAAGAAGGCCTTCTGGTTGCTTAATCCATGAAATGCCCAATGGTTATTCTAAGGTGACATGGGTTGAGCATGTGGAAGTGGATGATAGAGGTGTTCCTAACCTTTACAAGCAGCTTGTAAACTCTGGGCATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTGGATAGACAATGTGAGAGGCTTGCTAGTGCCATGGCAACAAACGTTCCTACCGTAGATGTTGGAGTGATAACAAACCAAGAAGGGAGGAAGAGTATGCTGAAGCTGGCAGAGAGAATGGTGATAAGCTTTTGTGGTGGAGTGAGTGCGTCAACAGCACACACGTGGACAACACTGAATGGGACAGGTGTCGATGATGTCAGAGTCATGACACGAAAGAGCGTTGATGATCCTGGAAGACCACCTGGCATTGTTCTAAGTGCTGCCACTTCCTTTTGGCTTCCAGTTCCTCCCAAAACAGCCTTTGATTTCCTCCGTGATGAGAATTCAAGAAGTGAGTGGGATATTCTTTCAAATGGTGGAGCAGTGCAAGAAATGGCGCACATTGCAAATGGAAGAGATACCGGAAATTGTGTGTCGCTACTTAGAGTCAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATACTGCAAGAGAGCTGCACAGATTCAACAGGCTCCTTTGTAGTTTATGCTCCTGTGGACATTGTTGCCATGAATGTGGTTTTGAATGGAGGGGACCCAGATTATGTGGCACTTCTTCCTTCAGGATTTGCCATCCTCCCCGATGGAAGTTCSGGCGGCTGCGGCAWCGGCATTGGTGGTGAAACAAATGGCCCTACTGGTGGGGGCGGTGGCGGCGGAGGTGGTTCTCTATTGACGGTTGCATTCCAAATATTGGTTGATTCAGTTCCAACGGCTAAGCTTTCTCTTGGGTCAGTTGCAACCGTTAATAGTCTTATTTCTTGCACTGTTGAGAGAATCAAGGCTTCTTTGTCTGGTGATCCTGCTTCACTATGA 2310 0.4827 MFQPNMTEAVGGLHYHHQYHPFDMAQNTTTSESDVPRIREDELFDSATKSGSENLEVEGGGGSGGGGEGGSAGEDQNPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQVKTQTERSENSQLRAENEKLRADNMRYREALSNASCPSCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNLSPALPPRPLELGVSGGSGGFGGGSDMYSGGAGDFLRSINGPSEADKPLIIELAVAAMEELVGMAQMGEPLWLTMTSIDGGTSTVLNEDEYVRTFPRGIGPKPAGFRSEASRETAVVIMNHVNLVEILMDVNNWSTMFSGIVSRAITIEVLSTGVAGNYNGALQVMSAELQVPSPLVPTRESYFVRYCKQHVDGSWAVVDVSLDHLRPGLTPRSRRRPSGCLIHEMPNGYSKVTWVEHVEVDDRGVPNLYKQLVNSGHAFGAKRWVATLDRQCERLASAMATNVPTVDVGVITNQEGRKSMLKLAERMVISFCGGVSASTAHTWTTLNGTGVDDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKTAFDFLRDENSRSEWDILSNGGAVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVVYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGSSGGCGXGIGGETNGPTGGGGGGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVERIKASLSGDPASL* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0834 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 764 IPR042160 -
Amo03g0834 769 Gene3D - 71 157 - -
Amo03g0834 769 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Amo03g0834 769 Pfam START domain 275 497 IPR002913 GO:0008289
Amo03g0834 769 CDD START_ArGLABRA2_like 269 496 - -
Amo03g0834 769 SUPERFAMILY Bet v1-like 267 499 - -
Amo03g0834 769 ProSiteProfiles START domain profile. 265 500 IPR002913 GO:0008289
Amo03g0834 769 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Amo03g0834 769 SMART HOX_1 81 144 IPR001356 GO:0003677
Amo03g0834 769 Pfam Homeodomain 83 138 IPR001356 GO:0003677
Amo03g0834 769 SUPERFAMILY Bet v1-like 516 759 - -
Amo03g0834 769 Coils Coil 139 166 - -
Amo03g0834 769 SUPERFAMILY Homeodomain-like 70 140 IPR009057 -
Amo03g0834 769 MobiDBLite consensus disorder prediction 24 96 - -
Amo03g0834 769 SMART START_1 274 497 IPR002913 GO:0008289
Amo03g0834 769 CDD homeodomain 83 140 IPR001356 GO:0003677
Amo03g0834 769 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 25 764 - -
Amo03g0834 769 Gene3D - 327 497 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0834 Amo-Chr3 17146261 17154886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0834 1 767 Homeobox Transcription Factor Family AT1G05230 73.047 0.0 1118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo03g0834 START 1.8e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0834 K09338 - gmx:100782260 1211.82