Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0805 ATGGGTCAAACAGAAATAAACTTCACTCCTCCCCGACACTACCTGTTTCCTTCATTGTTTCGTTTTCCTCTCATCGGTTACTCTAACAAAAAAACAAAATACCCCCAACAACTTCTGCACCGTGTTTTCCTCCCTCCGCCGCCAGCCGCCATCCGCCACTTATCCCAGCTCTCGCCATCGCGTCACCGCTGTGCTGCCACTCCTCAGCCTCGAGGGTACGGGTATTTCGATCCGCAAGAATGGGTTCCCGAAAGGGTGACAACCCTCACTTCGGTGACGGTGCCAGTCCTGGGTTTGCTTCCTCATTCGAAAATCTTTATCGGAGGTCTAGCCAAAGACACCACTTTGGATACTTTTGTTAAGTACTTCGAGAAGTACGGAGAGATAATGGACTCGGTTATCATGAAGGATCGGCATACCGGTAAACCCAGGGGTTTTGGTTTCATCACCTATGCGGATCCATCTGTTGTGGACCAGGTCATCCAGGAGAACCATGTTATCAATGGCAAACAGGTTGAGATCAAGAGGACTATTCCTAAGGGTTCATCACAAGCTAATGACTTCAAAACAAAGAAGATTTTTGTTGGTGGTATTTCAACATCGGTCACTGAAGATGAGTTTAAGAACTTTTTCTTGAAGTATGGGAAAGTTGTGGAACATGAGATTATACGTGATCACACTACTAAACGTTCCCGGGGTTTTGGCTTTATAGTTTTTGACAGTGAAAAAGTTGTTGACAATATGTTAGCAGATGGGAATATGATTGATATGTCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACTCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACTTCCTTACTATGATGGTTTTGGTGGATTTGGTGATTCTTTTGGAAGTTTTGGAAATAGCAGTTTTGATCCTGCTTCTTATAGATCACTTGGAGGATTTGGTGGTAGGCTTAGCAGCTATCGTGGAGAATCATCGTTTGGTTACTCTAGTCGCTATGGTTCCTTCATGGGGGGCCTTGGTGATGGTTATGGTGGGAGTGGTTTAGGTGCTTATGGACGAGGTGGTGGGTCCTATGGAAGCTATGGGGGTGTGGCTACTGGCGGAAGTTATGAACCAAGATCTGGTACTGGTTATGGTGGGGCTGGAGGACCTTATGGTAGTAGGGGAGGTTATGGTGGCAGTAGCCGCTACCATCCTTATGCAAGATAG 1230 0.461 MGQTEINFTPPRHYLFPSLFRFPLIGYSNKKTKYPQQLLHRVFLPPPPAAIRHLSQLSPSRHRCAATPQPRGYGYFDPQEWVPERVTTLTSVTVPVLGLLPHSKIFIGGLAKDTTLDTFVKYFEKYGEIMDSVIMKDRHTGKPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGISTSVTEDEFKNFFLKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNMLADGNMIDMSGTQVEIKKAEPKKSSNSASLPPFASDSRALPYYDGFGGFGDSFGSFGNSSFDPASYRSLGGFGGRLSSYRGESSFGYSSRYGSFMGGLGDGYGGSGLGAYGRGGGSYGSYGGVATGGSYEPRSGTGYGGAGGPYGSRGGYGGSSRYHPYAR* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0805 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Amo03g0805 409 PANTHER OS08G0320100 PROTEIN 103 329 - -
Amo03g0805 409 PANTHER OS08G0320100 PROTEIN 318 409 - -
Amo03g0805 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 171 IPR000504 GO:0003723
Amo03g0805 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 250 IPR000504 GO:0003723
Amo03g0805 409 SMART rrm1_1 104 175 IPR000504 GO:0003723
Amo03g0805 409 SMART rrm1_1 192 265 IPR000504 GO:0003723
Amo03g0805 409 Gene3D - 182 287 IPR012677 -
Amo03g0805 409 MobiDBLite consensus disorder prediction 379 409 - -
Amo03g0805 409 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 103 329 - -
Amo03g0805 409 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 318 409 - -
Amo03g0805 409 SUPERFAMILY RNA-binding domain, RBD 185 275 IPR035979 GO:0003676
Amo03g0805 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 179 IPR000504 GO:0003723
Amo03g0805 409 SUPERFAMILY RNA-binding domain, RBD 101 182 IPR035979 GO:0003676
Amo03g0805 409 Gene3D - 102 181 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0805 Amo-Chr3 16427624 16430257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0805 105 262 Eukaryotic Initiation Factors Gene Family AT2G23350 23.750 2.28e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0805 K12741 - gmx:100801373 398.667