Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0793 ATGTCTGTCCTTTCAGGAATGGAGGCTCTTGGTACCGTGGATGACCTCTTGGATTTCTCATCCGACGTAGGTGAGGATAATGATGTTGTTGTTGACAGACGCAGGAAAGGATTTCCTTGTAACCCAGAATGCAAACAACCTTCATTCACTCCGTTGGCCATGGATGATCCTAACTATTCATTCTCTGAGTTCGCCGAGGAAGAGCTTGAATGGTTGTCCAATAAAGACGCATTTCCTGCTGTCGAAACATTTGTCGACATACCATCTATTCGGCCTAACATGTCAAAGCACCAAGGGACAGCCTCAGTGCTTGAATATAGAAGGAGCATCCCCAATAATAACTGCACTAACAACATTACACTCTTAAACGGCTTTGATCACCTGAAGGTCCCTGTCCGAGCAAGGAGCAAGTGCCGTAGTAGGCCTCGCCTGGCTATTGCTGATGTCTCAAGTCATCAGTCCTGGTGGAGACTATCTAGTAGAGAAATTTCCGGAGCAGAAGTGATAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAGAAACTCCACAGTGGCGATCCGGTCCGCTTGGGCCAAAAACACTTTGTAATGCCTGTGGGGTTAGGTTCAAGTCTGGTCGGCTCGTCCCGGAGTACCGTCCTGCAACCAGCCCAACTTTTCGTCACGAGTTGCATTCTAATTCCCATAGGAAGATTATCGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGA 747 0.4739 MSVLSGMEALGTVDDLLDFSSDVGEDNDVVVDRRRKGFPCNPECKQPSFTPLAMDDPNYSFSEFAEEELEWLSNKDAFPAVETFVDIPSIRPNMSKHQGTASVLEYRRSIPNNNCTNNITLLNGFDHLKVPVRARSKCRSRPRLAIADVSSHQSWWRLSSREISGAEVIKIPTIGRKCQHCGSEETPQWRSGPLGPKTLCNACGVRFKSGRLVPEYRPATSPTFRHELHSNSHRKIIEMRKQKQMGMV* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0793 248 PANTHER GATA TRANSCRIPTION FACTOR 1 13 244 - -
Amo03g0793 248 Pfam GATA zinc finger 178 211 IPR000679 GO:0006355|GO:0043565
Amo03g0793 248 ProSiteProfiles GATA-type zinc finger domain profile. 172 208 IPR000679 GO:0006355|GO:0043565
Amo03g0793 248 CDD ZnF_GATA 177 225 IPR000679 GO:0006355|GO:0043565
Amo03g0793 248 PANTHER GATA TRANSCRIPTION FACTOR 13 244 - -
Amo03g0793 248 SMART GATA_3 172 222 IPR000679 GO:0006355|GO:0043565
Amo03g0793 248 ProSitePatterns GATA-type zinc finger domain. 178 203 IPR000679 GO:0006355|GO:0043565
Amo03g0793 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 174 235 - -
Amo03g0793 248 Gene3D - 173 245 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0793 Amo-Chr3 16212047 16213683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0793 13 245 C2C2-Gata Transcription Factor Family AT4G32890 38.550 3.49e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo03g0793 GATA 9.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0793 - - adu:107477758 490.345