Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0782 ATGGCAAAGGGTGATGATGCTGTGAGAAGGAAGAAGAACAAAGCCATATGCAAAAAGCTCAGAAGAAAGAATGACTCTTCCACTGTCTCTGCCAAGGCAGCTGCTGCTATTGCCGCCAAGAAGCGCCGCAAGGCCGGTAAACGCCGCATGTGCCAGGGAATGTGCTTTAGTCTGCCTTCTCCTGATGATCCATTTAATGATCATCATGGGAAAGAGATATTTAAAAGAAAAGCTCCTGGAAAGAAAAAATCCACCACAAAAGAAAAGGTTCCCCATAGAGAGGAGAGTGCAGCTAAAAGGGAAAACACATTTGGTGGGAATATTTCTAAGAAATCAATTTGTTTGCAAGTGGAAAATCAGCCTGTCATTGAGGTGACCGACATGGCTGACCGTTGTGGTGGTGTGCAACAACGAAATTGTGAATTGTCAGAGTTGCCTTCTAAGTTTGTCTTTTTGTGTCTAAGTTCAATTGAAAATGCATTGCACCATGGTGATGCCTATTCTGATGGAGAGGATAACATTTTGTCTGTTGACACATGGGGATTAGAGTTTCTAAAGTGTTATTCTACAGGGAAAGATCTGATAGAAACCAGTGGAACCTCTGCCACTACTGAGCAAGTTGCGTGGATTGTTTCTGGTGTAGCTGATACATTTGTGAGAAAAGAGAAGCAAGGCTTATCTCTTGGCAGTCCTTTCCTTTTATTCCTTGTACCTTCCCAAGAGAAAGCTTTACAGGTCAGAACAGTGTGCAAGCCTTTGAAATCACTAGGAATACATACAGTGAGTATTCATTCAGGTGCTACCTTAGATCATCAAATTCAAGGGTTGAAAAGTTGTGAACCTGAGTTTCTTGTTTCTACTCCAGAGAGATTAATGGAGCTTCTATCATTGAAGGCCATTGACATATCTGATGTCTCCATATTGGTTGTTGATGGGCTTAGTACTGTTTGTAGTGCTGGTTACGCTGATACTATTAAATCCATCAAGTCATTTATTTCCAGCGATCCTCGTGTTTTGGTTTTCAATGATTCCTTTAACCATACGTCTATCCCAATGGTTCGGCATCTTCTAAATGGGTCAATCTGTAGACTCTCGCTCAGTAATAAAATTACCAGCTTAAGTTCATGCATTATCCAGTCTGTCCGGGTGTGTACATCAGATGAAGAGAAGCTTCTTAAGAGCACTGAAGCCCTTGATCAATTTCGGAGCAGCTGTTCTCATAATTCAAACATGCTATATATCTTAAGGAAAGACATCAAGTGTAATAAGTTGGTCAAAACTCTCAAAGGAAGGGGTTGTTGCATTTCACTTGATTCTAGTACTGCAAGCTCTAATGACAGAGTGGATTCAAACAGCAGATCAGGACCAGTGGTTTCTGCAATAGATTTGGAGCATCTCTCCACTGCAGAGATAGGGCGGTATGATGTTGTAGTCTTACCTAGTTTTGTACCATCCATGGACACTTACATCCATATTTTGACAAAGATGGCGCGCGAAAGTGTCAATGGTGTTCTGCACAGTTTCTTAACAGCAGAAGACGGAGAACTAGCTGGGCAGCTCATCAGCATTCTTGAACAATGTGAGCAGGAAGTACCTGAAACCTTGCAAGATCTGCATCATAAATCCGAGATGAAAAAATGA 1641 0.4168 MAKGDDAVRRKKNKAICKKLRRKNDSSTVSAKAAAAIAAKKRRKAGKRRMCQGMCFSLPSPDDPFNDHHGKEIFKRKAPGKKKSTTKEKVPHREESAAKRENTFGGNISKKSICLQVENQPVIEVTDMADRCGGVQQRNCELSELPSKFVFLCLSSIENALHHGDAYSDGEDNILSVDTWGLEFLKCYSTGKDLIETSGTSATTEQVAWIVSGVADTFVRKEKQGLSLGSPFLLFLVPSQEKALQVRTVCKPLKSLGIHTVSIHSGATLDHQIQGLKSCEPEFLVSTPERLMELLSLKAIDISDVSILVVDGLSTVCSAGYADTIKSIKSFISSDPRVLVFNDSFNHTSIPMVRHLLNGSICRLSLSNKITSLSSCIIQSVRVCTSDEEKLLKSTEALDQFRSSCSHNSNMLYILRKDIKCNKLVKTLKGRGCCISLDSSTASSNDRVDSNSRSGPVVSAIDLEHLSTAEIGRYDVVVLPSFVPSMDTYIHILTKMARESVNGVLHSFLTAEDGELAGQLISILEQCEQEVPETLQDLHHKSEMKK* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0782 546 MobiDBLite consensus disorder prediction 84 100 - -
Amo03g0782 546 Gene3D - 222 368 IPR027417 -
Amo03g0782 546 Pfam DEAD/DEAH box helicase 225 332 IPR011545 GO:0003676|GO:0005524
Amo03g0782 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 357 IPR027417 -
Amo03g0782 546 Gene3D - 369 543 IPR027417 -
Amo03g0782 546 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 540 - -
Amo03g0782 546 MobiDBLite consensus disorder prediction 66 100 - -
Amo03g0782 546 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 ISOFORM X1 1 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0782 Amo-Chr3 15731389 15741946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0782 234 538 Eukaryotic Initiation Factors Gene Family AT1G72730 21.767 1.32e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0782 - - gmx:100809099 700.664