Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0756 ATGAGATTTGAGAGGATCATGGAATTTGAAACACTATGTGAGTGCTGTGGGGTTGCAAGAGCCATTGTTTATTGCAAATCAGATTCTGCACGTTTGTGCATGGATTGTGATGTGTCCGTACACAGTGCAAATTGTTTATCTATGAGGCACCTTCGTTCTCTCTTATGTGACAGGTGCAATTCCGAAGCAGCAATTGTTCATTGCATTGAGGAAAAGTTGTCATTTTGCCAAGGTTGTTGTGAATTGAACCAAAATGGGTGTTCAATTTTGGGACACAGGCTTCAATCSTTGAATTGTTACAAAGGTTGTCCCAATTTCACTGATTTGCCTGGCTTYTTCTCCTTTGTTCTCGATGATTATTCCTGTTCAAGTGGTTTGGACCATAATGGTGGCGGCAGCGGATCAATTGACACATCATTGCCTAGAAGTGAAAGCTGCAATAGCAAGTGTTTGGAGCAGCTTGTTAACACTATTAACAATGATGGCAATTTCGGTTTTGTTAATGAAAAGTTGAAGGAAACAGAACCATGTGTCAAATTTGAGCCTTGGATGGAGCAATCTTTGAGTTCCGGCATTCCTCCATCAAATGCAAACTACATGTCAATGCCATACTCTGGTGACCAAGCAATCTTCCTTCCAAACCTTCCAAAGGAATGTCCAAATTTGAACGATCTAGGAATCCATGATGGTGATGGTCTCAACATGGATAATTTTCAATTTAACTTTGAAAACACTGATGAAATATTTGACTATTCTCAAATTGATACAACATACCAAGTTGTTAATGGAGGAATGGACTGTGAATTAATGGGAAATAACATATCAGCAACAGAATCTAATGCTCTTTTCGAGAGTACAATAGAGGCTGGTGGATCAGCTAGCGAGATGTATGGAATCAACAGCAATGAGAATTGTGTGCTTATGCCTCCTAGCTGCAATGAAAACAGCAATCTGGGATTCTCAAAGGGTGGTCAACTCTATTCAAGCATGTCACTTCCACTTCCTAACGGCGAGAGTGAAATTGGTGCTACAGATTATCAAGATTCTGGTTTGTCATCGATGTTCCCGATAGGTGATTTGTCTATGGAACCAATCTCAAAGGGTACATGCCAGCAAGCTCGGGAGAAAGCAAAATTGAGATTAAATGAGAAAAAGAAAAATCTAAGGTTTGGTAAGCAAATAAGATATGAATCTCGCAAAGCAAGGGCTGATTCGAGAAAACGTGTGAAAGGTAGATTTGTGAAAGCAGGCGAAGCATATGATTACGATCCTAAGAAGACAAGGAGCCTCTAA 1293 0.3998 MRFERIMEFETLCECCGVARAIVYCKSDSARLCMDCDVSVHSANCLSMRHLRSLLCDRCNSEAAIVHCIEEKLSFCQGCCELNQNGCSILGHRLQSLNCYKGCPNFTDLPGFFSFVLDDYSCSSGLDHNGGGSGSIDTSLPRSESCNSKCLEQLVNTINNDGNFGFVNEKLKETEPCVKFEPWMEQSLSSGIPPSNANYMSMPYSGDQAIFLPNLPKECPNLNDLGIHDGDGLNMDNFQFNFENTDEIFDYSQIDTTYQVVNGGMDCELMGNNISATESNALFESTIEAGGSASEMYGINSNENCVLMPPSCNENSNLGFSKGGQLYSSMSLPLPNGESEIGATDYQDSGLSSMFPIGDLSMEPISKGTCQQAREKAKLRLNEKKKNLRFGKQIRYESRKARADSRKRVKGRFVKAGEAYDYDPKKTRSL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0756 430 CDD Bbox1_BBX-like 12 55 - -
Amo03g0756 430 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 12 425 - -
Amo03g0756 430 ProSiteProfiles Zinc finger B-box type profile. 8 55 IPR000315 GO:0008270
Amo03g0756 430 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 12 425 - -
Amo03g0756 430 SMART bboxneu5 8 55 IPR000315 GO:0008270
Amo03g0756 430 Pfam CCT motif 374 416 IPR010402 GO:0005515
Amo03g0756 430 ProSiteProfiles CCT domain profile. 374 416 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0756 Amo-Chr3 14810406 14812577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0756 9 424 C2C2-CO-like Transcription Factor Family AT3G21880 36.493 3.43e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo03g0756 CCT 1.9e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0756 - - ahf:112737556 868.226