Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0737 ATGGATCACAGAAACAATCCCAAGGACTCGCTCTCCTATTCCAATCTCTTCAATCTCGAGCCTTTGATGAACTTTCAACTTCCACAACGAGATGATGATTTTGGTTATTACGGGAATAGTAGTCAGGATGATGAGAGCAGAGATAGCCGAGGTGGTGGGGCAATGGCAAGTCACAGTAATGGGAATGTGAATGCGAACGGAAGGGAGGTAAATTTGTTGAAGAGAGGATGGTCTCAAAACAGTGACGAGGAAGAAAGGAGTCGGTTTTATGGAACATGTATCACAGAGGAGCGATATAGATCGATGCTTGGAGAGCATGTCCAGAAATACAAGAGGAGGTTTAAGGACACCTCATCTACTCATGCCCAAAATCAGGTTGCTGTTCCACCTGTCCAAAGTAGCAGTGGCTCAAAAGCTCGAAAGTCTGGGAATGATCACTATGGAGGACTGCATGCTGCAGAGATTGCATCTGAATGGCTATATGATTCCAATTCTCAGAAACCAGGAAACTACCATGATGCTAATTTCCTGCAGCGATATGCCTCTGATAGGACTATGTATGAACCTGCTTCTTTGGACATTACTGATGGTATCTCTTATAAGATTCCTCCAAAATATGATAAGCTAGCTTCAATGCTGAACCTGCCAAACTTCTCAGATATCCATGTAGATGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGGTGGCTACTGATAAAAGGTTCATGACTACAAACCGAGGAGGCATGGGGGAGCCTATGTCCCAATATGACTCACTTCAGGCACGCTTGAAGGCCATGTCCGCTTCTAATTCACCTCATAAGTTCAGTCTGAAAGTGTCCAATGTCGGTTTAAATTCCTTCATCCCAGAGGGGGCAGCTGGAAACATAAAGCGATCTATTTTGTCTGAGGGTGGTATAATTGAGCGAAGCCTACCTAAGAAGCAAAAGGTGAAAAAAGATCCTGCTTTGATTGAGAAGGAGGAAAGGGACAGAATTGGTAAGATTTGGGTAAACATTGTCAGAAGAGACGTTCCAAAACATCATAGGAATTTCACAATTTTTCATCGAAAGCAACTAATGGATGCCAAGAGAATGAAAGTTAGTAGATCACTTAGATGGACTCGGGGTGCCAGCATTCGCACCCGCAAACTAGCTAGAGACATGTTGTTTTTCTGGAAACGAGCTGATAAGGAGATGATTGAATTGAGAAAAAGAGAGGAAAAAGAAGCTGCTGAAGCATTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAACAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTCTACAGTCACTTCATGCAGAACAAATCAAGCTTATTATCTTCAGAGGCTTTACCAATGGAAGATGAAAAAGCAGATGATCAAGATGCACTTTTTGACTCTTCAGATGCTGGCCCGATTGAGGATGATCCTGAAGAGGCTGAATTGAAAAAGGAAGCTCTGAAGGCTGCTCAAGAAGCTGTCTCCAAACAAAGAAAGTTGACAAGTGCTTTCGACAGTGAATGCCTGAGGCTGCGCCAGGCTGGTGAAGCTGATCCACTTTCACAGGAGGTAGCAGGAGCGAGTGACATTGATTTGCAAACTCCCTCAACTATGCCTGTGGCATCTACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTTGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACAATTCAGGCTATGGTATTTTTGGCCCATTTAGCTGAGGAGAAAAATATATGGGGGCCTTTTCTGGTTGTTGCACCTGCATCTGTTTTAAACAATTGGAATGAGGAACTTGAGCGCTTTTGCCCTGAACTCAAGAGACTTCCTTATTGGGGAGGTGTTGCCGAGCGATCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTATATCGTAGGGACGCTAAATTCCACATTGTCATCACTAGCTATCAGCTGTTAGTACAAGACGAGAAGTTTTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAGGCTCAAGCAATAAAAAATTCAACCAGCATAAGATGGAAGACACTCCTTAGCTTTAATTGTCGGAATCGCCTTCTTCTTACTGGCACACCTATTCAGAATAATATGGCAGAGCTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGCACTCAATTCTGA 2301 0.4294 MDHRNNPKDSLSYSNLFNLEPLMNFQLPQRDDDFGYYGNSSQDDESRDSRGGGAMASHSNGNVNANGREVNLLKRGWSQNSDEEERSRFYGTCITEERYRSMLGEHVQKYKRRFKDTSSTHAQNQVAVPPVQSSSGSKARKSGNDHYGGLHAAEIASEWLYDSNSQKPGNYHDANFLQRYASDRTMYEPASLDITDGISYKIPPKYDKLASMLNLPNFSDIHVDEFYLKGTLDLGSLAAMVATDKRFMTTNRGGMGEPMSQYDSLQARLKAMSASNSPHKFSLKVSNVGLNSFIPEGAAGNIKRSILSEGGIIERSLPKKQKVKKDPALIEKEERDRIGKIWVNIVRRDVPKHHRNFTIFHRKQLMDAKRMKVSRSLRWTRGASIRTRKLARDMLFFWKRADKEMIELRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSLLSSEALPMEDEKADDQDALFDSSDAGPIEDDPEEAELKKEALKAAQEAVSKQRKLTSAFDSECLRLRQAGEADPLSQEVAGASDIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVAERSVLRKSINPKDLYRRDAKFHIVITSYQLLVQDEKFFRRVKWQYMVLDEAQAIKNSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGTQF* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0737 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 762 IPR027417 -
Amo03g0737 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 577 748 IPR014001 -
Amo03g0737 766 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 763 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Amo03g0737 766 PANTHER HELICASE SRCAP-RELATED 17 763 - -
Amo03g0737 766 Gene3D - 538 765 IPR038718 -
Amo03g0737 766 Pfam DNA-binding domain 337 454 IPR020838 GO:0003677
Amo03g0737 766 Pfam SNF2-related domain 580 762 IPR000330 GO:0005524|GO:0140658
Amo03g0737 766 SMART ultradead3 561 756 IPR014001 -
Amo03g0737 766 MobiDBLite consensus disorder prediction 119 141 - -
Amo03g0737 766 ProSiteProfiles DBINO domain profile. 341 456 IPR020838 GO:0003677
Amo03g0737 766 Coils Coil 403 442 - -
Amo03g0737 766 MobiDBLite consensus disorder prediction 117 145 - -
Amo03g0737 766 MobiDBLite consensus disorder prediction 30 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0737 Amo-Chr3 14010884 14019065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0737 551 752 RAD5 or RAD16-like Gene Family AT1G02670 27.854 7.75e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo03g0737 SNF2_N 6.2e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0737 K11665 - gmx:100780615 1179.08