Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0681 ATGGTTAGAACACCTTCTTGTGACAAGAGTGGATTGAGGAAAGGAACTTGGACTCCTGAGGAAGATAGGAAGTTAATTGCCTATGTTACTAGGTATGGTAGCTGGAATTGGCGCCAATTGCCTAAGTTTGCAGGACTGGCTAGGTGTGGGAAAAGTTGTAGATTGAGGTGGATGAATTACCTAAGGCCTAATCTCAAAAGAGGGAACTTCACTCAAGAGGAAGAAGCTTGCATAATCAAATTGCATTCTAAACTTGGAAATAGATGGTCTGCCATTGCTGCGGAACTACCTGGAAGAACTGATAACGAAATCAAGAACCATTGGCACACCACACTCAAGAAGCGCTTCCAAACCAATGAAGAAGAATCCGAAACCGCCACCAAATCCAAACCCAAAGAAACTACTCAGATCTCAGCAGAGAGCAACACTACTACTACTACTACTACTTCACCATTATCACCATTGTCATCTTCAAGTGAATTTTCCTCCATAACTTCCTGGGATCAAAGTCACAATAATAATAATAATAAGAACAATCTGGTTCTTGAAGACGACGATTTCGCTTTTCTGGATGGAAGTTTCTGGACAGAACCATATCTTGCTGAAATCTTGCATGAACAAGAAACAGTAGTAACAGTGCCTAGTAGTACTAGCAATGTGTTTGATCCTTGTGAAATCTCAGTGGCCAATGAAAATGAAGAGTTGGAATTATCATCCAACAACAGTACGTCAAGTTTGTTTGATCTGGAGAAAGAGTTTGGGAGCTTCTTGATTGAACCAACAATGATGGAAAGTTTTTGGACCCAGCCATGTGTGTCTGAATCTGATGACGTGTCCCACATTCCTTTTATGCCTCCATCATCTGAATACTTTACAACGCTGTGTGGGTCAGATCCTTGGAGCACTCCAAGTACTACTCATTTGTATGATCAACATCTTAGCTTATTCCATTGA 954 0.4099 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTQEEEACIIKLHSKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRFQTNEEESETATKSKPKETTQISAESNTTTTTTTSPLSPLSSSSEFSSITSWDQSHNNNNNKNNLVLEDDDFAFLDGSFWTEPYLAEILHEQETVVTVPSSTSNVFDPCEISVANENEELELSSNNSTSSLFDLEKEFGSFLIEPTMMESFWTQPCVSESDDVSHIPFMPPSSEYFTTLCGSDPWSTPSTTHLYDQHLSLFH* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0681 317 CDD SANT 69 112 IPR001005 -
Amo03g0681 317 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo03g0681 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo03g0681 317 MobiDBLite consensus disorder prediction 114 129 - -
Amo03g0681 317 CDD SANT 16 61 IPR001005 -
Amo03g0681 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo03g0681 317 MobiDBLite consensus disorder prediction 130 167 - -
Amo03g0681 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo03g0681 317 Gene3D - 69 142 - -
Amo03g0681 317 Gene3D - 6 67 - -
Amo03g0681 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo03g0681 317 SMART sant 13 63 IPR001005 -
Amo03g0681 317 SMART sant 66 114 IPR001005 -
Amo03g0681 317 MobiDBLite consensus disorder prediction 114 167 - -
Amo03g0681 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Amo03g0681 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo03g0681 317 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 234 - -
Amo03g0681 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0681 Amo-Chr3 12552686 12554147 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0681 1 197 MYB Transcription Factor Family AT2G31180 52.525 3.34e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo03g0681 Myb_DNA-binding 8.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0681 K09422 - gmx:100777107 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1954 13 29408721 29410548 Amo03g0681 03 12552686 12554147 hybridization
Amo03g0681 03 12552686 12554147 Amo08g1130 08 18855398 18856411 PCT