Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0678 ATGGTGAGAGCTCCTTTCTATGACAAATATGGAGTGAAGAAAGGTGCATGGAGTAGAGAAGAGGATCAAAGATTAATAGCTTTTGTTCAAAGATATGGTCATTCTAATTGGCGTCAGCTCCCAAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGCTGGTTGAATTACTTGAGGCCAAATCTAAAACATGGGAACTACACCCAAGAGGAAGAAGAATTAATAATCAAATTACACCAAGAATTAGGAAATAGATGGTCTTTGATTGCTGAAAGACTTCCTGGAAGAACAGACAATGAAATAAAGAACCATTGGCATAGCCACCTCAAGAAGTTATCATCAAAAAACAACAACAATGAGATCAACCCATCATCTGAATCTGAATCTGAATCAAAATCAAACAACCCAATTGATGATGATATTCTTGAAGGAAAACATACCAATCAGCCTAAAGATTCTGTAAGGCCAAGTTATGATTATGTTGATAGTGCTAATAATAATAAATTCCAGCACCGTGTTCTAGAAAGTTCATCATCAACAGAAACTTCGTCATATACTGATGATGAAGTAGGTCACAGCTATTATTCTCTTACTCCCAATAATGTTGAACAATCAACAATAATGAATAACTCTCCAACATCAAGCGAAGATTATTGTGTGGTTCCGTCAGTATCATTTGAAGAATTTGGTGGAGATTTTTGGACTGAGCCATTCATAGTGGCAAATAATGATGCATATGGTAATGATGAGATAATAATAAGTGGTGAAGACGATGTTGGGTTTCTTGTTCCATACTTGTACGAGAGTGCAGATTTTTGTTTTAACTTGTAG 840 0.3619 MVRAPFYDKYGVKKGAWSREEDQRLIAFVQRYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTQEEEELIIKLHQELGNRWSLIAERLPGRTDNEIKNHWHSHLKKLSSKNNNNEINPSSESESESKSNNPIDDDILEGKHTNQPKDSVRPSYDYVDSANNNKFQHRVLESSSSTETSSYTDDEVGHSYYSLTPNNVEQSTIMNNSPTSSEDYCVVPSVSFEEFGGDFWTEPFIVANNDAYGNDEIIISGEDDVGFLVPYLYESADFCFNL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0678 279 MobiDBLite consensus disorder prediction 135 155 - -
Amo03g0678 279 CDD SANT 69 112 IPR001005 -
Amo03g0678 279 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo03g0678 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo03g0678 279 MobiDBLite consensus disorder prediction 114 195 - -
Amo03g0678 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo03g0678 279 CDD SANT 16 61 IPR001005 -
Amo03g0678 279 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo03g0678 279 MobiDBLite consensus disorder prediction 156 195 - -
Amo03g0678 279 SMART sant 13 63 IPR001005 -
Amo03g0678 279 SMART sant 66 114 IPR001005 -
Amo03g0678 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 249 - -
Amo03g0678 279 MobiDBLite consensus disorder prediction 115 134 - -
Amo03g0678 279 PANTHER MYB-RELATED PROTEIN 308-LIKE 1 249 - -
Amo03g0678 279 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo03g0678 279 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Amo03g0678 279 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo03g0678 279 Gene3D - 13 66 - -
Amo03g0678 279 Gene3D - 69 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0678 Amo-Chr3 12500948 12502864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0678 1 194 MYB Transcription Factor Family AT2G31180 48.309 1.01e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo03g0678 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0678 K09422 - gmx:100781032 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1130 08 18855398 18856411 Amo03g0678 03 12500948 12502864 PCT
Amo03g0678 03 12500948 12502864 Amo18g0928 18 13947617 13948949 PCT
Amo03g0678 03 12500948 12502864 Amo08g1129 08 18816278 18818777 PCT