Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0677 ATGGTGAGAGCTCCATACTTTGATGCGAATGGAATAAAGAAAGGTGCCTGGAGTGAAGAAGAGGATAAGAAACTTACTGCTTATGTTGAGAGATATGGTCACCCTAATTGGCGTCAACTCCCAAGGCTTGCAGGTTTGTTGAGATGTGGAAAGAGCTGCAGACTTCGTTGGATGAATTACTTGCGGCCAAATCTAAAGAGAGGGAACTACACCCAAAAGGAAGAGCAGCTTATCATGGATTTGCATAAACAACATGGAAACAAATGGTCACTGATTGCTGAAAATCTACCTGGAAGAACAGACAACGAGATCAAGAACTATTGGCATAGCCACCTGAAGAAGTTCCAAAACTGCAATGTGAACAACACAGCAAGTGATGATGATGATGATGATTTGAACAAGTCCAAGTCCAAGTCCAAGTCTTCTTCTCAGAATACCAAAGAACATGAAAGACCAAAAAGTGAAGTCCTTACTATTACTACTGTTGATGATAACGATGATGATTCACACCATATCTTGGAAAGTTCGTTATCCAATGTGACAACTGAGTCTTCCTATTCGTACACTGAAGAAGAAGAAGACAACAACAACAACAACGACAATAATGCATGGCTCTGCTTTTCCTCTGGTCATGAAGAAGAGTCAAATAGGGAAGAAGATAGGTTTGCTTCGTGGGGTGCAACAACTTTGTTTGATGAGTTTGGTTCCAGTTTTTGGACTGAACCATTTATTTCAGATGATGCTTTTAGTCAAGATTACAATTACATTTTGTATGATAGAGAAGATCCTTTTTTCATTTGA 801 0.3945 MVRAPYFDANGIKKGAWSEEEDKKLTAYVERYGHPNWRQLPRLAGLLRCGKSCRLRWMNYLRPNLKRGNYTQKEEQLIMDLHKQHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFQNCNVNNTASDDDDDDLNKSKSKSKSSSQNTKEHERPKSEVLTITTVDDNDDDSHHILESSLSNVTTESSYSYTEEEEDNNNNNDNNAWLCFSSGHEEESNREEDRFASWGATTLFDEFGSSFWTEPFISDDAFSQDYNYILYDREDPFFI* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0677 266 MobiDBLite consensus disorder prediction 127 157 - -
Amo03g0677 266 Gene3D - 7 67 - -
Amo03g0677 266 CDD SANT 69 112 IPR001005 -
Amo03g0677 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo03g0677 266 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 259 - -
Amo03g0677 266 CDD SANT 16 61 IPR001005 -
Amo03g0677 266 MobiDBLite consensus disorder prediction 124 202 - -
Amo03g0677 266 PANTHER MYB TRANSCRIPTION FACTOR 1 259 - -
Amo03g0677 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo03g0677 266 Gene3D - 69 114 - -
Amo03g0677 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo03g0677 266 SMART sant 13 63 IPR001005 -
Amo03g0677 266 SMART sant 66 114 IPR001005 -
Amo03g0677 266 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo03g0677 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo03g0677 266 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo03g0677 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0677 Amo-Chr3 12474453 12476301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0677 1 168 MYB Transcription Factor Family AT2G31180 51.479 3.41e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo03g0677 Myb_DNA-binding 8.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0677 K09422 - gmx:100781032 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0928 18 13947617 13948949 Amo03g0677 03 12474453 12476301 PCT
Amo08g1129 08 18816278 18818777 Amo03g0677 03 12474453 12476301 PCT