Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0606 ATGGCTGCTTCTGCTGCAAGGAACAGTGGTAAATCCACAAAGGGTGCTGTTGTTGAAGATTCTCATCATCAAAGGGTAATTGCTGAAAGTGGAAGCCAACAAGATTTGGAGATGATGATGATAGATAAGGGAAAAGGCGTTGAGAGGCGGCAATGGAAGCCAGTTTTTGATGAAGCTTCCATGTCAAATAGGCCTCATAAGAAGATTAATCAATCACCACCATCACCATCATCATCATTTTTAAAACAACAAGAACCTCCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAGAATAGTGTTCCCTTTTGCATTTGAAGGCTCTCAAACTCAGAATCAAGCAATGCAATTCCCACACCAATTTGGAACCACAAACATGCCTCTCTTCCATCCACCACCACCACAAATTCAGCCATCACAARTACCATTACATCAAAACATGATATCTTTTGGGTCTCAACACCAACAACACCTTCAAAATCTTCAGTATTGGAGTGACACACTGAATCTAAGTCCAAGAGGGAGAGCCATGGCCATGATGAACAACAGAATAGGGCCTGATGGAAGGCCATTGTTTTCGCCTTCACCTCCGGTGCCSTTGAATGCTACAAAGCTCTATAGAGGTGTGAGGCAGCGCCATTGGGGGAAATGGGTAGCAGAGATTCGCCTCCCTCGCAATAGGACTCGCCTATGGCTTGGGACATTCGACACGGCTGAGGACGCCGCCATGGCCTATGACCGCGAGGCCTTCAAGCTTAGAGGGGAGAATGCTAGGCTAAATTTCCCTGAGCTCTTTCTCAACAAGGAWAAAGATCAATCAACAAAAATGGCACAAGATTCTTCTTCTTCTTCTGCTTCGGCATCAAAGGTACCAGAGGCAGAGCAGCCAGAGCCAGAGCCGGAGCCAGAAGAAGACATCACTATGCAGCAGGATTTGAACSCTGKGAGCYTGCCGCCGCCGCCAGCGCCACCATTGCCTCCGGCTTCAATGATTGATGACAATGCTGATAATGATTCAGGAGCTCCGCAGTCTCAGGAGTTGGTTTGGGGGGAAATGGCTGCTTGGTTTAATGCAATTCCTGCAGCTTGGGGTCCTGGTAGTCCTGTGTGGGATGATTTGGACTCAAACAACAATCTTCTGTTTCAATCACAAATTCCATTTATGAATCACAATCAGCAAGAATTCAATGACGATGATGATCCTGAAGCTCATAGAACAATAGAAGGAGATAATAACAGAAAACCAGGTTCTTCTTCCTCTTCTTCTTGCCCTGTTAGACCCTTCTTCTGGAAGGATCAAGATTGA 1308 0.4549 MAASAARNSGKSTKGAVVEDSHHQRVIAESGSQQDLEMMMIDKGKGVERRQWKPVFDEASMSNRPHKKINQSPPSPSSSFLKQQEPPFSSSSSSSSSSRIVFPFAFEGSQTQNQAMQFPHQFGTTNMPLFHPPPPQIQPSQXPLHQNMISFGSQHQQHLQNLQYWSDTLNLSPRGRAMAMMNNRIGPDGRPLFSPSPPVPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKXKDQSTKMAQDSSSSSASASKVPEAEQPEPEPEPEEDITMQQDLNXXSLPPPPAPPLPPASMIDDNADNDSGAPQSQELVWGEMAAWFNAIPAAWGPGSPVWDDLDSNNNLLFQSQIPFMNHNQQEFNDDDDPEAHRTIEGDNNRKPGSSSSSSCPVRPFFWKDQD* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0606 435 MobiDBLite consensus disorder prediction 65 94 - -
Amo03g0606 435 Pfam AP2 domain 207 255 IPR001471 GO:0003700|GO:0006355
Amo03g0606 435 MobiDBLite consensus disorder prediction 385 435 - -
Amo03g0606 435 MobiDBLite consensus disorder prediction 1 94 - -
Amo03g0606 435 MobiDBLite consensus disorder prediction 271 347 - -
Amo03g0606 435 MobiDBLite consensus disorder prediction 112 143 - -
Amo03g0606 435 MobiDBLite consensus disorder prediction 1 15 - -
Amo03g0606 435 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 7 432 - -
Amo03g0606 435 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 7 432 - -
Amo03g0606 435 ProSiteProfiles AP2/ERF domain profile. 206 263 IPR001471 GO:0003700|GO:0006355
Amo03g0606 435 SUPERFAMILY DNA-binding domain 206 264 IPR016177 GO:0003677
Amo03g0606 435 SMART rav1_2 206 269 IPR001471 GO:0003700|GO:0006355
Amo03g0606 435 PRINTS Ethylene responsive element binding protein signature 229 245 IPR001471 GO:0003700|GO:0006355
Amo03g0606 435 PRINTS Ethylene responsive element binding protein signature 207 218 IPR001471 GO:0003700|GO:0006355
Amo03g0606 435 MobiDBLite consensus disorder prediction 41 64 - -
Amo03g0606 435 Gene3D AP2/ERF domain 206 264 IPR036955 GO:0003700|GO:0006355
Amo03g0606 435 MobiDBLite consensus disorder prediction 272 291 - -
Amo03g0606 435 MobiDBLite consensus disorder prediction 413 427 - -
Amo03g0606 435 MobiDBLite consensus disorder prediction 394 412 - -
Amo03g0606 435 CDD AP2 205 265 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0606 Amo-Chr3 11152714 11155372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0606 134 374 AP2-EREBP Transcription Factor Family AT2G20880 47.893 1.84e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo03g0606 AP2 2.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0606 - - adu:107477889 823.928