Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0580 AGGGTTGGGGATGTTCGAATTAAAGATAAGTCACTTGATGGTTATGATGTGGAAGTTTCATCAATTGATAAGAAAGACAATGGTTCAGTTCAGCCATATGATGATCAAACTGGGAAGAAGAAGATAGAGAAACCTGAATTAATTATTATTGACCATCCTGCTATTGGAAGGATTCCAAAGGCTGGATGGATACCAAGGAGCGCAAATACTTTTGAAAGTCTTAACTCTGAGAGCATCAAGTTTATGGCAAGGGAAATCCTTATTCTACGTAGGCTCAACCATCCAAACATAATAAAGTTGGACAGCTTGATAACATCACAAACATCCCATAGCTTATACCTTCTAAAATGCTACATGCAACAACTTTTTAGTGGATTGGATCATTGCCATAGTCATGGTGTCCTCCATCGTGATATAAAGGGATCAAATATTCTCATTGACAATAATAATGTCTTAAAGATTGCAGATTTTGGTTTGACAAATTTTTTTGACCCCCATCATAGTGTTCCATTGATAGGCCGTGTTGTGACTCTTTGGTATAGACCACCAGAACTTTTACTTGGAGAAAATTATTATGGAGTTGCAGTGGATTTGTGGAACACTGGTTGTATATTGAGAGAACTATATAGTGATAGACCTATATTGCCAGAAAAAACAGAGGTTGAGCAGATACATCGAATTTTTAAACTTTGTGGTTTCTCATCTGATGATTATTGGCTAAAATTGCTGTTGCCACTTTCAACGGTATTCAAGTCTCCACACCATTATAAGAGATGTATTGCAGACACATTTAAGAATTATCCACATACTACTGTGAAGCTCATAGAGACTCTACTATCTATTGATCCAACACATCGAGGACCAGTTGCCACTGCTCTCAGAAGTGAGTTCTTTACATTGGAACCTCTGCTTTGTGATCCATCAAGCTTACCAAAATATCCTCCCAGCAAAAAAATTGACGCCAAATTACAGTGTTATGTTGGAGATAGAGAGAAAAAAGATGACTCAAGAGTTAGACAAATATCAAGGACACATGTCACAATAAAAGATAATGTTGATTCAAGTAATTCAAAAAAAGATTCAATTTTTATTAACCAAAATGAAGTCTCCAACTCTCATAGAGAATATGTGTCCAAACAACTAATTTACCCACCCAAACATTCAAAAGATGCCAAAAAAATAGGAAAAAATCTTTCTGGGCATATCCATTGGAGGCCTTTGCATATAAGTCCATTGGTTCCTATCAGTTCTGGTTGGGTAACAGGTGAAAATAAAATTGATGATGAGCTTCTTATTTCACACAGAATAGACCATATGAAACTATCTAGACTAATAACATCTAAGATTCAACTCTAA 1356 0.3584 RVGDVRIKDKSLDGYDVEVSSIDKKDNGSVQPYDDQTGKKKIEKPELIIIDHPAIGRIPKAGWIPRSANTFESLNSESIKFMAREILILRRLNHPNIIKLDSLITSQTSHSLYLLKCYMQQLFSGLDHCHSHGVLHRDIKGSNILIDNNNVLKIADFGLTNFFDPHHSVPLIGRVVTLWYRPPELLLGENYYGVAVDLWNTGCILRELYSDRPILPEKTEVEQIHRIFKLCGFSSDDYWLKLLLPLSTVFKSPHHYKRCIADTFKNYPHTTVKLIETLLSIDPTHRGPVATALRSEFFTLEPLLCDPSSLPKYPPSKKIDAKLQCYVGDREKKDDSRVRQISRTHVTIKDNVDSSNSKKDSIFINQNEVSNSHREYVSKQLIYPPKHSKDAKKIGKNLSGHIHWRPLHISPLVPISSGWVTGENKIDDELLISHRIDHMKLSRLITSKIQL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0580 451 Pfam Protein kinase domain 102 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0580 451 SUPERFAMILY Protein kinase-like (PK-like) 74 299 IPR011009 -
Amo03g0580 451 PANTHER CELL DIVISION PROTEIN KINASE 75 114 - -
Amo03g0580 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Amo03g0580 451 PANTHER CELL DIVISION PROTEIN KINASE 115 433 - -
Amo03g0580 451 PANTHER CYCLIN-DEPENDENT KINASE 75 114 - -
Amo03g0580 451 PANTHER CYCLIN-DEPENDENT KINASE 115 433 - -
Amo03g0580 451 ProSiteProfiles Protein kinase domain profile. 1 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0580 451 SMART serkin_6 15 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0580 451 Gene3D Phosphorylase Kinase; domain 1 65 113 - -
Amo03g0580 451 Gene3D Transferase(Phosphotransferase) domain 1 114 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0580 Amo-Chr3 10574870 10579495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0580 84 322 Core Cell Cycle Gene Families AT5G10270 39.928 2.88e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo03g0580 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0580 - - adu:107478228 689.108