Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0579 ATGGCACAATCTGTTGATGAGCAACTTCTTGTTATTGCTTTCAATGATAAGCCTGTGAAGAATTTGAAGGGCTTGGCCACCATGATTGAGAACTGTGATGATGAGTTTCTAAAGTTTGATCTGGAATACCAACAGGATGTGACAGAACTAAAAAGAAATGAATTTGAGGATTATTTTTTGAAGCGAGAGTTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGGACAGGCAAAACAGCTGCATTTTACATTCCTGCATTGGAAAAAATTGACCAGAAACAATCTATCCTAGCATAG 372 0.3844 MAQSVDEQLLVIAFNDKPVKNLKGLATMIENCDDEFLKFDLEYQQDVTELKRNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFYIPALEKIDQKQSILA* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0579 123 Gene3D - 3 57 IPR046449 -
Amo03g0579 123 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 53 81 IPR014014 GO:0003724
Amo03g0579 123 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 44 120 - -
Amo03g0579 123 Pfam DEAD/DEAH box helicase 78 116 IPR011545 GO:0003676|GO:0005524
Amo03g0579 123 Gene3D - 58 122 IPR027417 -
Amo03g0579 123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 117 IPR027417 -
Amo03g0579 123 Pfam PDZ domain 8 47 IPR041517 -
Amo03g0579 123 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 44 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0579 Amo-Chr3 10554686 10556738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0579 55 116 Eukaryotic Initiation Factors Gene Family AT5G11200 48.387 1.16e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0579 K12614 - ahf:112717194 218.009