Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0578 ATGATCTCTTTTGCAACAATAACAACAATAATGTCTTCCCTTCTCATATATCTCTTCCTTCTGAGAATAACCTTAGTTTCTTCGTCAACAGAATTTGTCTACAACACCAACTTCAACTCCACCAACATAAATCTCTATGCAAACGCCACTATTGATGATCACTCTCACTCTTCAATTCTCACCCTTACCAACCATGCCTCTTTCTCTATTGGCCGTGCTTTCTACCCTTCCAAGATCCCAACAAAATCTTCCTTTTCTTCCAACCCTTTACCGTTCTCAACCTCCTTCATCTTCTCTATTGCACCATTCAAGCACCTTCTCCCTGGCCATGGTTTTGTGTTCTTGTTCTCACCTTTTGAAGGAGCAAACGGGGTTAGCTCAGCTCAGCACCTTGGCCTCTTCAACTTGACCAACAATGGTAACCCCAAAAACCATGTTTTTGGGATTGAGTTTGATGTGTTCAAGAACCAAGAATTCAATGACATCAATGATAACCATGTGGGTTTGGATGTGAATTCTCTTACTTCTTTGGCCTCACACGATGCTGGATTTTGGGTCAGTGGAAAACATGATGAAAAGTTTAAGGAATTGAAGCTTAACAATGGTGAGAACTATCAAGTGTGGATTGAGTATTCAGATTCTAGAGTTAATGTAGCAATGGCTATTGCAGGGAAAAGAAGGCCTAATAGGCCTTTGATTAGTGAACTTGTGAATCTTTCTGATGTCTTTTTGGATGAAATGTTTGTGGGATTTTGTGGAGCAACAGGGCAACTTGTTGAGAGTCACAAGATTTTGGCATGGAGCTTTAGCAACTCAAATTTTTCAATCGGCGATGCTTTGGTGACTACGAATTTGCCTTCATTTGTGCTTCCAAAAGAACCAGTTTTGAAGTCAAGAGGTTTTGTTTCAGGTATCAGTTTTGGGATTTTTATCTTTGTTATTGGTAGTGCAGCTATGGTGTTTGTTGTTTTGCTCAAAAGAAAAAGAAGCAAAAGAATGGAGGAAGAGGGAGATATTGAAGACTGGGAATTAGAGTATTGGCCACACCGTATTAGTTATGAAGACATTTATGCTGCAACTAAAGGATTTTCAGAACAGAATATAATTGGGTTTGGAGGGAATGGAAAAGTTTATAAAGGGATTCTACAAGGAGTAGAGGTAGCAGTGAAAAGAATCCCTTATGACAGTGAATATGGTATGAGGGAGTTTCTATCTGAGATTTCAAGCTTAGGAAGATTGAAGCATAGGAATGTGGTTCCATTGAGGGGTTGGTGCAAGAAAGAGAGAGGAAGCTTGATCCTAATTTATGATTATATGGAGAATGGAAGTTTGGACAAGATAATATTTGATTCTGATGAGAACTCAATTTTCCATTGGAAAAACAGAATCAAGGTGCTGAAGGATGTGGCTATGGGGATATTGTATTTGCATGAGAGTTGGGAAGTTAAGGTGTTGCATAGGGACATAAAAGCAAGCAATGTGTTACTTGACAAGGATATGAATGCAAGGTTGGGGGATTTTGGACTCGCCCGGATGCATCATCATGAGCAGATACCTAACACCTCTCGAGTGATCGGAACGGTTGGCTACATGGCACCGGAACTGCTAAGAACCGGGAGAGCCTCGACGCAAACTGATGTGTTCAGCTTCGGCGTGTTGGTTCTAGAGGTTGTGTGTGGGAGAAGGCCTATAGAAGAGAATAAGCCAGCATTGGTTGGTTGGGTGTGGAGGCTAATGGAGAGAGGACAGTTGTGTTGTGCTCTTGATGAAAGATTGAAAATGAGGGGTGATGAAGATTATAGCATTGATGAAGTTGAGAGAGTTCTTCATCTTGGTTTGTTGTGCACACATTATGATCCTCAAGTTAGGCCAAGTATGAGGCAAGTTGTGAAGGTTTTGGAGGGTGAGAGTTTGGAAATAAGCTTAGTTGATAAAATAAATTCCGCTGCTGATGGATATAGTGGGGTTCACCCCACCATTGAAGATATATCTCAATGTTCTTTCACAACTCAATGTGAGGGCAGATGA 2028 0.4083 MISFATITTIMSSLLIYLFLLRITLVSSSTEFVYNTNFNSTNINLYANATIDDHSHSSILTLTNHASFSIGRAFYPSKIPTKSSFSSNPLPFSTSFIFSIAPFKHLLPGHGFVFLFSPFEGANGVSSAQHLGLFNLTNNGNPKNHVFGIEFDVFKNQEFNDINDNHVGLDVNSLTSLASHDAGFWVSGKHDEKFKELKLNNGENYQVWIEYSDSRVNVAMAIAGKRRPNRPLISELVNLSDVFLDEMFVGFCGATGQLVESHKILAWSFSNSNFSIGDALVTTNLPSFVLPKEPVLKSRGFVSGISFGIFIFVIGSAAMVFVVLLKRKRSKRMEEEGDIEDWELEYWPHRISYEDIYAATKGFSEQNIIGFGGNGKVYKGILQGVEVAVKRIPYDSEYGMREFLSEISSLGRLKHRNVVPLRGWCKKERGSLILIYDYMENGSLDKIIFDSDENSIFHWKNRIKVLKDVAMGILYLHESWEVKVLHRDIKASNVLLDKDMNARLGDFGLARMHHHEQIPNTSRVIGTVGYMAPELLRTGRASTQTDVFSFGVLVLEVVCGRRPIEENKPALVGWVWRLMERGQLCCALDERLKMRGDEDYSIDEVERVLHLGLLCTHYDPQVRPSMRQVVKVLEGESLEISLVDKINSAADGYSGVHPTIEDISQCSFTTQCEGR* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0578 675 Pfam Legume lectin domain 30 273 IPR001220 GO:0030246
Amo03g0578 675 CDD STKc_IRAK 369 635 - -
Amo03g0578 675 Pfam Protein kinase domain 364 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0578 675 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 15 638 - -
Amo03g0578 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 274 IPR013320 -
Amo03g0578 675 ProSiteProfiles Protein kinase domain profile. 363 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0578 675 CDD lectin_legume_LecRK_Arcelin_ConA 30 272 IPR001220 GO:0030246
Amo03g0578 675 SUPERFAMILY Protein kinase-like (PK-like) 341 634 IPR011009 -
Amo03g0578 675 Gene3D - 27 273 - -
Amo03g0578 675 Gene3D Phosphorylase Kinase; domain 1 323 438 - -
Amo03g0578 675 Gene3D Transferase(Phosphotransferase) domain 1 439 648 - -
Amo03g0578 675 PANTHER - 15 638 - -
Amo03g0578 675 SMART serkin_6 363 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0578 675 ProSitePatterns Protein kinases ATP-binding region signature. 369 390 IPR017441 GO:0005524
Amo03g0578 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Amo03g0578 675 Coils Coil 325 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0578 Amo-Chr3 10533045 10538335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0578 28 587 Receptor kinase-like Gene Family AT4G04960 62.544 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Amo03g0578 Pkinase 6.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0578 - - adu:107478122 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1246 08 20339364 20347829 Amo03g0578 03 10533045 10538335 PCT