Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0569 ATGAATTCACTAGTTTTTCAWTATATACCAATAATAATGGATCCTGGAAGTCAACCCTCATCTTCAACCACCAACAAGATTGAAAGAAGGCTCATTGAGAAAAACAGAAGGAACCACATGAAGATGCTTTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAAGCGTTGCCACTGCCGGATCAAGTGGACGAAGCTATAAACTACATAAAGAACTTAGAGGAGAAGGTGAAGACAGCCAAGGAGAAGAAAGACGGCTTATTGGAAAGAATGGGAAGGAAAAGGACACGTGGCGGTGGCCGCGATGGTAGTGGTTGCAGCAACACGAAACCGCCACAACTTGAGGTTCATGAAACTGGTTCATGTCTTGAAATTGTAATGACATGTGGCTTAGAAAACCAGTTCATATTCTATGAGATAATTCGCATACTCAATGAAGAGAACATCGATGTTAAGAGTGCTAATTCCTCACTCCTCGGAGATTCTATGATCCATGTTCTCCATGCAGAGATTCCTCCGCTATTGATTCAATTTGGGGCGACTAAAGTGAGTGAGAGATTGAAAAGGTTTGTGAATGGATCAGCCAGTGATATTGAATTATTGCAACCAGAGTTCTGGGATTTTGAGATTGACACTGATATCTGGAGCTTCTAG 663 0.4178 MNSLVFXYIPIIMDPGSQPSSSTTNKIERRLIEKNRRNHMKMLYSKLNSLLPNYNPKEALPLPDQVDEAINYIKNLEEKVKTAKEKKDGLLERMGRKRTRGGGRDGSGCSNTKPPQLEVHETGSCLEIVMTCGLENQFIFYEIIRILNEENIDVKSANSSLLGDSMIHVLHAEIPPLLIQFGATKVSERLKRFVNGSASDIELLQPEFWDFEIDTDIWSF* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0569 220 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 20 201 - -
Amo03g0569 220 Coils Coil 66 93 - -
Amo03g0569 220 MobiDBLite consensus disorder prediction 86 103 - -
Amo03g0569 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 76 IPR011598 GO:0046983
Amo03g0569 220 MobiDBLite consensus disorder prediction 86 115 - -
Amo03g0569 220 Gene3D - 16 100 IPR036638 GO:0046983
Amo03g0569 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 94 IPR036638 GO:0046983
Amo03g0569 220 Pfam Helix-loop-helix DNA-binding domain 27 77 IPR011598 GO:0046983
Amo03g0569 220 SMART finulus 30 82 IPR011598 GO:0046983
Amo03g0569 220 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 20 201 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0569 Amo-Chr3 10426434 10427749 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0569 18 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.095 2.94e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g0569 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0569 - - gmx:100817883 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1252 08 20468208 20469767 Amo03g0569 03 10426434 10427749 PCT
Amo03g0569 03 10426434 10427749 Amo08g1252 08 20468208 20469767 PCT