Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0565 ATGACGCATGCTCATCCAGGGCAGAGACTTTCAGGAAATCAAACTCTAGTTTCCTATGGACAAATATTTGAAATGGGTTTCTTCTCACCATCAGGTTCAGAACTTGACAAGCATGGCAATCTATCTCTCTATACTTCCACCGGTCATGCAGTTTGGTCAGCGAACTCTTCCTTTAGTTTGGATGATCCTTTGGATTCGAAAGCTGCTAAGCTTCGGGAAGATGGAAACTTTATTATAAGCAGTATTAAAAGGGTTCTGAAATCTTGGCTAGCTACAAGTAATCCATCAACTGGCAACTTCTCTGCCGAGGTAACTACAGTTTCTGTGGATTTAGCTGAGGTTCAATTGTTGCAAAATGATGGTTTTACTGAGTCTAAATTCTGCATAAATCGGTTTCATGAAACTAAAGATTACGTGTATGATTTTGAATTTCACTTTATAGGATATGTGGACATTTACTCGTATGTTTTGTTTTCATATGGCAACTCATACAATCTTGCAAGATATGTTTTAGATGGATCTGGAAAGCTCAAACTTTTAGGGTGGTCAAACGAATGGGTTACCATCAACATGGACCACAAAAAATGTGACTTTCACGGTCGTAATGAGGATACAAGAGTGAATGCCAAACATAGTGGAAGGAAGAATGCTACTTGGGTGGTTGTGGAGGTGGCGATTGGGCTTACTAGTGTGATGGTTGCTATTGCCATTTTGCTGATAAGGCTATGGAAGAGAGGCACCACCACTTCATCTAAGGTAATGGGAGGAGATACATTGAAGCAGTACAACTACAGAGATTTGAGAAAAGCAACTAGAAACTTCACAATTAAGCTTGGAAACGGTGGTTTCAGCACTGTTTACAAAGGGGAATTCCCTGATTCAACTTTCGTAGCTGTCAAGGAACTTCGAGGACACTTTCAAGAAGAAAAACAGCTTCGAGCAGAACTCAATACGGTAGGGCTGATCCAGCACAAAAATCTTGTTCGCTTACTTGGATTCTGCTTACAAGGTTCCCAGAGATTCATAATTTATGATTACATGCCAAATGGTTCTCTAGAATCTCACTTGTTCCAGAGTGATTCTAATGTCTTAGATTGGGGAACTAGATACAATATTGCTCTTGGCACTGCCAAAGGTTTAGCTTACCTACATGAGCATTGTAGAGACTGCATCATTCATTGCGACATCAAGCCGGAGAACATTTTGTTGGATGCCGAGTTTAATCCTCAAGTCGCGGACTTTGGCTTGGCAAAGCTTCTAGGCCGAGACTTTAGTCGAGTTCTTACTACCATGAGAGGAACAAGAGGCTATCTTGCAACAGAGTGGTTCTCCGGCGTTCCAATCACTGCAAAAGTTGATGTATATAGCTATGGTCAAGTCCTTCTTGAGATCATTTCAGGTAGAAGGAACATGGATCTAGTAAATGATGATCTAGCTAGTTATTTCCCGTCAATTGTTTTCAATGCATTGAACAATGGGGAGGATGTTCTGCCTTTAGTAGATTCCAAACTACAAGGCAAATTCAGCGCAGAAGAGGTAAATAGAGCATGCAAGGTTGGTTGTTGGTGCATTCAAGATGATGAGAATGATAGACCAACAATGAAAGAGGTTGTTCAAGCTTTGGAAGGAAATCTTGATGTAGGTATTCCTCCTATTCCGCAGTTTTTCCTGTCCTTAGCAGAACCTTCTGTCCAAAAAGGTGATCTGAAGGAAAGCAAGGATTATAGTACATCGAGCACACTACCTTCGAGTTTCAGCTTTCAAGCACCAGTTCACCAAGTTCAGGATGAACCTTGA 1797 0.4101 MTHAHPGQRLSGNQTLVSYGQIFEMGFFSPSGSELDKHGNLSLYTSTGHAVWSANSSFSLDDPLDSKAAKLREDGNFIISSIKRVLKSWLATSNPSTGNFSAEVTTVSVDLAEVQLLQNDGFTESKFCINRFHETKDYVYDFEFHFIGYVDIYSYVLFSYGNSYNLARYVLDGSGKLKLLGWSNEWVTINMDHKKCDFHGRNEDTRVNAKHSGRKNATWVVVEVAIGLTSVMVAIAILLIRLWKRGTTTSSKVMGGDTLKQYNYRDLRKATRNFTIKLGNGGFSTVYKGEFPDSTFVAVKELRGHFQEEKQLRAELNTVGLIQHKNLVRLLGFCLQGSQRFIIYDYMPNGSLESHLFQSDSNVLDWGTRYNIALGTAKGLAYLHEHCRDCIIHCDIKPENILLDAEFNPQVADFGLAKLLGRDFSRVLTTMRGTRGYLATEWFSGVPITAKVDVYSYGQVLLEIISGRRNMDLVNDDLASYFPSIVFNALNNGEDVLPLVDSKLQGKFSAEEVNRACKVGCWCIQDDENDRPTMKEVVQALEGNLDVGIPPIPQFFLSLAEPSVQKGDLKESKDYSTSSTLPSSFSFQAPVHQVQDEP* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0565 598 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 197 561 - -
Amo03g0565 598 Pfam Protein kinase domain 277 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0565 598 ProSiteProfiles Protein kinase domain profile. 272 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0565 598 PANTHER LECTIN PROTEIN KINASE FAMILY PROTEIN, PUTATIVE-RELATED 197 561 - -
Amo03g0565 598 Gene3D Transferase(Phosphotransferase) domain 1 347 547 - -
Amo03g0565 598 SUPERFAMILY Protein kinase-like (PK-like) 252 541 IPR011009 -
Amo03g0565 598 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 4 80 - -
Amo03g0565 598 SUPERFAMILY alpha-D-mannose-specific plant lectins 35 104 IPR036426 -
Amo03g0565 598 SMART serkin_6 272 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0565 598 SMART blect_4 7 123 IPR001480 -
Amo03g0565 598 ProSitePatterns Protein kinases ATP-binding region signature. 278 300 IPR017441 GO:0005524
Amo03g0565 598 MobiDBLite consensus disorder prediction 568 598 - -
Amo03g0565 598 CDD STKc_IRAK 278 543 - -
Amo03g0565 598 ProSiteProfiles Bulb-type lectin domain profile. 1 129 IPR001480 -
Amo03g0565 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Amo03g0565 598 Gene3D Phosphorylase Kinase; domain 1 239 346 - -
Amo03g0565 598 Gene3D - 2 111 IPR036426 -
Amo03g0565 598 MobiDBLite consensus disorder prediction 574 591 - -
Amo03g0565 598 PANTHER LECTIN PROTEIN KINASE FAMILY PROTEIN, PUTATIVE-RELATED 4 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0565 Amo-Chr3 10300811 10303781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0565 252 551 Receptor kinase-like Gene Family AT5G20050 42.767 1.85e-71 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo03g0565 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0565 - - ahf:112789804 1123.61