Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0564 ATGGGGTCATGGGTGTTCAAGTTTGATCTTGTTCTGCTCTTTCTCATGTCGTTCTGGTTCCATGTATCCATTGAATCTGATAGCATCTTTCCAGGGCAGAGACTTTCAGGAAGCGAAACTCTAGTTTCCGATGGAGAAATGTTTGAAATGGGTTTCTTCTCAACATCAGGTTCAGGTAACAACTCTCGGAATTGTTACATAGGGATATGGTACAAAGGGTTACCAACGCCAGAAAGAACAGTGGTGTGGGTAGCCAACAGGGATCATCCTATATCTGATCCATACTCTTCATGGTTAGAACTTGACAAGCATGGCAATCTCTCTCTCTATACTTCCACCGGTGATGCAGTTTGGTCAACCAACTCTTCCTTTAGTTTGGGTCCTTTGGACTCGATAGCTGCTAATCTTCGGGAAGATGGAAACTTTATTATAAGCAGCTCACTTGACGACTACAGTTGGCAAAGCTTTGATTACCTAACTGATACCTTGCTGCCTTATGCGAAGTGGGGATATGATAACGACAGAGGTATTAAAAAGGTTCTGAAATCTTGGCTTCATGCACCTAATCCATCAACTGGCAACTTCTCTGCTGAGGTGAGTAGAGTTTCTGCGGATTTAGCTGAGGTCCAATTGTTACAAAATGATGGTTTTATGGAGTCTAAATTCTTCATAGATCGGTTTCAAGGAATCATATATTACACGTATGTTATTGAATTTAACTTTATAGGATACTCAGACAATTACTCGTATGTAACATTTTCATGTTACTCTCTCTCATCCTGTCTTGCTAGATATGTGTTAGATGGATCTGGAAACCTCAAACTTTTCTGGTGGTCGGATGATAAAAACGAATGGGTTACCATCCCCGTGGACCACAAAAAATGTGACCTTCACAGTGGAAATGAGGATACAAGAGTGAATGGCAAACATAGTGGAAGGAAGAATGTTACTTGGGTGATTGTGGTGGCAGCAATTGGGCTTGCTAGTGTGATGGTTGCTATTGCCATTTTGCTGATAAGGCTGTGGAAAAGAGGCACTACCACTTCATCTAATGCAATGGCAGGAGATACACTGAAGCAGTACAACTACAGAGATTTGAGAAAAGCAACTAGAAACTTCACAATTAAGCTTGGGAAAGGTGGTTTCAGCACTGTTTACAAAGGGGAATTCCCTGATTCAACTTTCATTGCTGTCAAGGAACTTCGAGGACACTTTCAAGAAGAAAAACAGCTTCGAGCAGAACTCAATACGGTAGGGCTGATCCAGCACAAAAATCTTGTTCGCTTACTTGGATTCTGCTTACAAGGTTCCCAGAGATTCATAATTTATGATTACATGCCAAATGGTTCTCTAGAATCTCACTTGTTCCAGAGTGATTCTAATGTCTTAGATTGGGGAACTAGATACAATATTGCTCTTGGCACTGCCAAAGGTTTAGCTTACCTACATGAGCATTGTAGAGACTGCATCATTCATTGCGACATCAAGCCGGAGAACATTTTGTTGGACGCTGAATTTAATCCTCAAGTTGCGGATTTTGGCTTGGCGAAGCTTCTAGGCCGAGACTTCAGCCGGGTTCTTACCACCATGAGAGGAACAAGAGGCTATCTAGCACCAGAGTGGTTCTCTGGTGTCCCAATCACTGCAAAAGTTGATGTGTATAGCTACGGCCAGGTCCTTCTTGAGATCATTTCAGGTAGAAGGAACATGGATATAGTAAATGACGATCTAGCTAGTTATTTCCCGGCAATTGTTTTCAATGCATTGAACAATGGGGAGGATGTTCTGCCTTTAGTAGATTCCAAACTACAAGGCAAATTCAGAGCAGAAGAGCTGATTAGAGCATGCAAGGTTGGTTGTTGGTGCATTCAAGATGATGAGAATGATAGACCAACAATGAAAGAGGTTGTTCAAGCTTTGGAAGGACATCTTGATGTTGGTATTCCTCCAATTCCACGGTTTTTCCTGTCCTTAGCAGAACCTTCTGTCCAAAACGGTGATCTGAAGGAAATCGAGGATTATAGCACATCGAGCACACTACCTTCAAGTTTCAGCTTTAGCTTTCGACCACCATCAGTTCAAGTTGAACTATGA 2094 0.4198 MGSWVFKFDLVLLFLMSFWFHVSIESDSIFPGQRLSGSETLVSDGEMFEMGFFSTSGSGNNSRNCYIGIWYKGLPTPERTVVWVANRDHPISDPYSSWLELDKHGNLSLYTSTGDAVWSTNSSFSLGPLDSIAANLREDGNFIISSSLDDYSWQSFDYLTDTLLPYAKWGYDNDRGIKKVLKSWLHAPNPSTGNFSAEVSRVSADLAEVQLLQNDGFMESKFFIDRFQGIIYYTYVIEFNFIGYSDNYSYVTFSCYSLSSCLARYVLDGSGNLKLFWWSDDKNEWVTIPVDHKKCDLHSGNEDTRVNGKHSGRKNVTWVIVVAAIGLASVMVAIAILLIRLWKRGTTTSSNAMAGDTLKQYNYRDLRKATRNFTIKLGKGGFSTVYKGEFPDSTFIAVKELRGHFQEEKQLRAELNTVGLIQHKNLVRLLGFCLQGSQRFIIYDYMPNGSLESHLFQSDSNVLDWGTRYNIALGTAKGLAYLHEHCRDCIIHCDIKPENILLDAEFNPQVADFGLAKLLGRDFSRVLTTMRGTRGYLAPEWFSGVPITAKVDVYSYGQVLLEIISGRRNMDIVNDDLASYFPAIVFNALNNGEDVLPLVDSKLQGKFRAEELIRACKVGCWCIQDDENDRPTMKEVVQALEGHLDVGIPPIPRFFLSLAEPSVQNGDLKEIEDYSTSSTLPSSFSFSFRPPSVQVEL* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0564 697 CDD B_lectin 35 158 IPR001480 -
Amo03g0564 697 ProSiteProfiles Bulb-type lectin domain profile. 26 157 IPR001480 -
Amo03g0564 697 ProSiteProfiles Protein kinase domain profile. 371 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0564 697 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 309 660 - -
Amo03g0564 697 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 8 296 - -
Amo03g0564 697 Gene3D Transferase(Phosphotransferase) domain 1 446 646 - -
Amo03g0564 697 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Amo03g0564 697 Gene3D - 20 156 IPR036426 -
Amo03g0564 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Amo03g0564 697 Pfam D-mannose binding lectin 80 184 IPR001480 -
Amo03g0564 697 PIRSF SRK 289 687 IPR024171 GO:0004674
Amo03g0564 697 PIRSF SRK 2 300 IPR024171 GO:0004674
Amo03g0564 697 CDD STKc_IRAK 377 642 - -
Amo03g0564 697 SMART blect_4 32 159 IPR001480 -
Amo03g0564 697 PANTHER LECTIN PROTEIN KINASE FAMILY PROTEIN, PUTATIVE-RELATED 309 660 - -
Amo03g0564 697 SMART serkin_6 371 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0564 697 Gene3D Phosphorylase Kinase; domain 1 338 445 - -
Amo03g0564 697 PANTHER LECTIN PROTEIN KINASE FAMILY PROTEIN, PUTATIVE-RELATED 8 296 - -
Amo03g0564 697 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 184 IPR036426 -
Amo03g0564 697 SUPERFAMILY Protein kinase-like (PK-like) 350 640 IPR011009 -
Amo03g0564 697 Pfam Protein kinase domain 376 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0564 Amo-Chr3 10286256 10289403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0564 321 650 Receptor kinase-like Gene Family AT5G20050 39.286 4.19e-72 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo03g0564 Pkinase 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0564 - - ahf:112737678 1403.65