Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0548 ATGGATGAATTGGAAAGTAGAAGTGAAGCTTCTCCATCTTCAACAAACAAGGAGAAGATTGAGAGAAGGTTCATTGAGAGAAACAGAAGGAAGCACATGAAGATGCTCTACTCCACACTCAACTCTCTTCTCCCTAACGACCCCAACCCCACTAGGCCCAAGGAAGCACTGCTATTGCTTGATCAAGTGGACAAGGCCTTAAATTACATCAAGAGCTTAGAGGAGAAGGTAAAAATGTCTAAGGAGAAGAAAAATAGCTTACTATTGAGAATGGGAAGAAAGAGGACACGTGGCGCTTGCGACGATGGTAATCGCCCCAAACCGCCGCAACTAGAGGTTCATGAAATGGGTTCATGTCTTCAAATTGTAATGACATGTGGATTAGATTCCCAGTTCATATTCTATAAAATCATTCATATTCTGAATGAAGAAAACATCGATGTTAAGAGTGCCAATTCTTCGCTCATCGGAAATTCCATGCACCATGTTGTTCATGCAGAGATTCCACAATCTTTGCTTCAATTGGGTGCGACTAAAGTAAGGGAGAGTTTGAAAAGGTTTGTGCAGGAACCAATTAGTAAAAATGAATTACAATCTGATCATGAGTTGTTAGATTTTGAGATCGATACTGCTGAATTAGCGGAGCTTCTAGATTTCTTAGCATAA 666 0.4039 MDELESRSEASPSSTNKEKIERRFIERNRRKHMKMLYSTLNSLLPNDPNPTRPKEALLLLDQVDKALNYIKSLEEKVKMSKEKKNSLLLRMGRKRTRGACDDGNRPKPPQLEVHEMGSCLQIVMTCGLDSQFIFYKIIHILNEENIDVKSANSSLIGNSMHHVVHAEIPQSLLQLGATKVRESLKRFVQEPISKNELQSDHELLDFEIDTAELAELLDFLA* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0548 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 73 IPR011598 GO:0046983
Amo03g0548 221 SMART finulus 23 79 IPR011598 GO:0046983
Amo03g0548 221 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 13 195 - -
Amo03g0548 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 94 IPR036638 GO:0046983
Amo03g0548 221 Pfam Helix-loop-helix DNA-binding domain 22 74 IPR011598 GO:0046983
Amo03g0548 221 MobiDBLite consensus disorder prediction 1 20 - -
Amo03g0548 221 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 195 IPR015660 GO:0003700|GO:0006357
Amo03g0548 221 Coils Coil 63 90 - -
Amo03g0548 221 Gene3D - 9 98 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0548 Amo-Chr3 10072339 10074077 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0548 9 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 32.461 4.47e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g0548 HLH 7.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0548 - - gmx:100817883 214.542