Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0545 ATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTATCTTTGGTAAGGAAAGAGACTCTATGCTGGGTGAAAATGACGAAGAGAAGAGAGACCCTGTATTGATAATCTGTCCGACTTCTGTCATTCATAACTGGGAGAGTGAGTTCTCTAAATGGGCTAATTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGATACATGAGAAACTAGAAGCAAATGGAGTGGAGATACTTATTACAAGTTTTGACACTTACAGAATTCACGGAAGTTCCTTGTCAGATTTCGAATGGGGCATTGTAATTGTTGACGAGGCTCACCGGCTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCCTAGACGTTATGGTCTTACAGGGACCATAATGCAAAATAAGATAATGGAGTTGTTTAATCTCTTTGACTGGGTTGCACCTGGATCACTTGGGACACGGGAGCACTTTCGCGAGTTCTATGATGAACCCCTTAAACATGGTCAGAGGTCATCTGCTCCTGACAAGTTTGTCCAAATTGCTAATAAAAGAAAACAACACCTTGTGAATGTTCTTCATAAATATTTGTTGAGAAGGACAAAGGAAGAGACAATTGGACATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCCATGAGTGATTTGCAAAGACGTGTTTACAAGAGAATGTTACAGCTTCCTGATATCCAATGCCTTATAAACAAGGACCTGCCTTGTAGTTGTGGTAGCCCACTTACACAAGTTGAATGTTGTAAGAGGACAGTACCAAATGGAATTATTTGGCCTTACCTTCACCGAGATAACCCTGATGGTTGTGATTCATGCCCTTTCTGCATTGTCCTTCCGTGCCTTGTCAAGCTTCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGAGAAGCAAGGCAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCTCTGATATTGATTTGGTTGGCGGAAATATGCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGTGGAAAAATGCGAGCACTTGAAAAGCTTCTGTACTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCGGTGAGGATGCTTGACATACTGGAGAAATTTCTCATACGGAAAGGCTACTGCTTCTCAAGACTTGATGGGTCTACTCCAACAAATTTGCGCCAGTCTTTAGTTGATGATTTCAACTCTAGTCCTAGCAAACAAGTATTTTTGATATCAACTCGTGCCGGTGGGCTTGGGTTAAACCTTGTCAGTGCAAACCGGGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGGCAGAAGCGACATGTTCTGGTGTTCCGTCTTCTTGCAGCTGGTTCGCTTGAAGAACTTGTTTATTCTCGTCAGGTGTATAAGCAGCAGCTTTCAAACATTGCTGTCTCAGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGCGATTTATCTGACAAGCTATTTACTAGTGAAATCATTAAACTGCATGAAATGGGAAAGGAACATCACAATACAATAGAACAGGAAAAAGAAAATCTTTTAGAAGAAACTGATTCTCTAAAATCGGCTTCTGACACTGAAATATGTGCTGGAACTGCAAGCAACGTAGCAAGTAAACCAGATTTTGAAGACCTTGGAATTGTGTATGCTCATCGAAATGAAGACATTGTCAACTGTGGACCTGTGATTCAGGGGAAGATAGATAGCAGGATCCCTTCAAAGAGTGATAGCTTAGTCAAGGCAAGCATCTCTTCAGTCAACCAAAGAAATAAACCAGATTGTGTACCTAAAAAACAGAAAGCTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGCTTGCTTGCACATTCTATGGGCATGGAAGAGCTTGCATTTAGCAAATGGTTACTATCAGCAACTCCTAAGGAGAGGGAGGAAGTGCTTCAAGACTTCAAGAAGAAAAAGAAGATGCCTAATGGTTAA 2142 0.4076 MGLGKTIQAIAFLAAIFGKERDSMLGENDEEKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIHEKLEANGVEILITSFDTYRIHGSSLSDFEWGIVIVDEAHRLKNEKSKLYKACLEIKTPRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSSAPDKFVQIANKRKQHLVNVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQRRVYKRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPNGIIWPYLHRDNPDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDPEKQGKDAEFAAAVFGSDIDLVGGNMQSESFMDLSDVKHCGKMRALEKLLYSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIKLHEMGKEHHNTIEQEKENLLEETDSLKSASDTEICAGTASNVASKPDFEDLGIVYAHRNEDIVNCGPVIQGKIDSRIPSKSDSLVKASISSVNQRNKPDCVPKKQKAPLIDERKRTQYSLLAHSMGMEELAFSKWLLSATPKEREEVLQDFKKKKKMPNG* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0545 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 528 IPR027417 -
Amo03g0545 713 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 157 IPR014001 -
Amo03g0545 713 Pfam SNF2-related domain 1 247 IPR000330 GO:0005524|GO:0140658
Amo03g0545 713 SMART ultradead3 1 165 IPR014001 -
Amo03g0545 713 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 103 112 IPR002464 -
Amo03g0545 713 Coils Coil 562 585 - -
Amo03g0545 713 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 519 IPR001650 -
Amo03g0545 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 207 IPR027417 -
Amo03g0545 713 CDD SF2_C_SNF 357 486 - -
Amo03g0545 713 Gene3D - 1 206 IPR038718 -
Amo03g0545 713 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 1 703 - -
Amo03g0545 713 Pfam Helicase conserved C-terminal domain 363 475 IPR001650 -
Amo03g0545 713 PANTHER SNF2/RAD54 FAMILY MEMBER 1 703 - -
Amo03g0545 713 SMART helicmild6 392 475 IPR001650 -
Amo03g0545 713 Gene3D - 219 588 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0545 Amo-Chr3 10003735 10009997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0545 364 505 RAD5 or RAD16-like Gene Family AT5G43530 39.437 1.35e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo03g0545 SNF2_N 6.6e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0545 K20098 - gmx:100781003 1222.99